Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0239
         (766 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;...    85   1e-15
UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ci...    77   6e-13
UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein ...    63   8e-09
UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-bindi...    47   4e-04
UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whol...    42   0.017
UniRef50_Q5BBJ7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;
           Eumetazoa|Rep: Core-binding factor subunit beta - Homo
           sapiens (Human)
          Length = 182

 Score = 85.4 bits (202), Expect = 1e-15
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPY--------NNRGCDFQKXNGKAHI 414
           EERQ RF + CR+G +EIAF  TGTNL L F  + +        +    D ++  GK ++
Sbjct: 38  EERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYL 97

Query: 415 VSRFIMNGVCVRWRGWIDLERARWAPGCLEL--ARREQRXKMQHYVIRSRGYNQRLRDFX 588
            +  I+NGVCV W+GWIDL+R     GCLE    R +Q   +           +R R+F 
Sbjct: 98  KAPMILNGVCVIWKGWIDLQRLD-GMGCLEFDEERAQQEDALAQQAFEEA--RRRTREFE 154

Query: 589 DKQRGXRXHGE 621
           D+ R  R   E
Sbjct: 155 DRDRSHREEME 165



 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 23/35 (65%), Positives = 33/35 (94%)
 Frame = +2

Query: 149 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDR
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDR 35


>UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ciona
           intestinalis|Rep: Core-binding factor, b subunit - Ciona
           intestinalis (Transparent sea squirt)
          Length = 181

 Score = 76.6 bits (180), Expect = 6e-13
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVF-DHSPYNNRGC-------DFQKXNGKAHI 414
           EERQ+RF + CR G  EIAF G+GTN  L F   S    +G        +F +  GK H+
Sbjct: 42  EERQLRFQNSCRAGRAEIAFVGSGTNFTLQFYPWSVEGGQGITPPKDYVNFDREPGKVHL 101

Query: 415 VSRFIMNGVCVRWRGWIDLER 477
            + FI+NGVCV W+GW+DL R
Sbjct: 102 KAPFILNGVCVCWKGWMDLHR 122



 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 35/38 (92%)
 Frame = +2

Query: 140 IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           + KMPRVV DQ+A ++S++LF+RLSR++E++YTGYRDR
Sbjct: 2   LLKMPRVVSDQRATYDSNELFRRLSRDTEIKYTGYRDR 39


>UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein
           LOC468115, partial; n=1; Pan troglodytes|Rep: PREDICTED:
           hypothetical protein LOC468115, partial - Pan
           troglodytes
          Length = 197

 Score = 62.9 bits (146), Expect = 8e-09
 Identities = 24/36 (66%), Positives = 34/36 (94%)
 Frame = +2

Query: 146 KMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           KMPRVVPDQ++KFE+++ F++LSRE E++YTG+RDR
Sbjct: 71  KMPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDR 106



 Score = 50.4 bits (115), Expect = 5e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +2

Query: 149 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYR 247
           MPRVVPDQ++KFE+++ F++LSRE EVR  G R
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEVRQAGGR 33


>UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-binding
           factor, beta subunit, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to core-binding factor,
           beta subunit, partial - Ornithorhynchus anatinus
          Length = 117

 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVF 351
           EERQ RF + CR+G +EIAF  TGTNL L F
Sbjct: 12  EERQARFQNACRDGRSEIAFVATGTNLSLQF 42


>UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whole
           genome shotgun sequence; n=6; Euteleostomi|Rep:
           Chromosome undetermined SCAF19216, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 76

 Score = 41.9 bits (94), Expect = 0.017
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +1

Query: 403 KAHIVSRFIMNGVCVRWRGWIDLERARWAPGCLELARREQRXKMQHYVIRSRGYNQRLRD 582
           + ++ +  I+NGVCV W+GWIDL R     G LE      + +            +R RD
Sbjct: 1   QVYLKAPMILNGVCVIWKGWIDLHRLD-GMGYLEYDEERAQHEDALAQAAFEEARRRNRD 59

Query: 583 FXDKQRGXR 609
           F D+ R  R
Sbjct: 60  FEDRDRSHR 68


>UniRef50_Q5BBJ7 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 648

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 165 PIKKP-NSNQTISSKDLAEKVRLD-TL-DTETGSRRTPDAIHERLPRGTHGDSVYRYRHK 335
           P+K P  SN  I    ++E   LD TL D+E GSR   D + E  P   H DSV    H 
Sbjct: 521 PMKAPLTSNAPIM---VSETQSLDQTLPDSEDGSRTPTDIVPESSPAARHEDSVPLNGHG 577

Query: 336 PSA 344
           PSA
Sbjct: 578 PSA 580


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,538,752
Number of Sequences: 1657284
Number of extensions: 14606960
Number of successful extensions: 40430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40419
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)