Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0239
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    28   1.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.2  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    27   3.9  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.8  

>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 698 QPHSGXHFNTPPTXPLGIILKT 763
           +PHS   + TPP  P+ II+ T
Sbjct: 528 KPHSHRSYGTPPVHPIDIIIAT 549


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 ESDDLFKRLSRESEVRYTGYRDRLPKNARCDS 280
           + DD+FKRL ++ + R   YR R  + +  +S
Sbjct: 390 QEDDIFKRLKQQEDRRNENYRRRQQRESNQES 421


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 516 SPRQLKTARRPSSPFQIDPTSPSYTNTVHDE 424
           +P +  T   P     +DP  PS+   +HD+
Sbjct: 257 APLEFDTTHLPEKQVTLDPNDPSFYEQLHDK 287


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 178 GFLIGHYTWHFENEPWLWL 122
           GF  G Y WHF +  WL+L
Sbjct: 246 GFECGIYYWHFCDVVWLFL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,865
Number of Sequences: 5004
Number of extensions: 56417
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)