Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0239
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    29   4.1  
03_02_0339 - 7623897-7625837                                           29   4.1  
10_01_0164 + 1863890-1866253                                           29   5.4  
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350...    28   9.4  
06_03_0575 + 22431744-22432212,22432473-22433077                       28   9.4  
01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440...    28   9.4  

>03_02_0928 +
           12464325-12464498,12466494-12466679,12466929-12467021,
           12467212-12467394,12467506-12467608,12467695-12467865,
           12468086-12469084,12469178-12469254,12469485-12470337,
           12470878-12471000,12471526-12471878
          Length = 1104

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 564 VXSRSDHVMLHLXSLLSPRQLKTARRPSSPFQIDPTSPSYTNTVHDESGYDVS 406
           + S SD V   L  LLSP   +T  R  SP     ++   +   HDES +D S
Sbjct: 590 ITSNSDVV---LPGLLSPSSTETDERRLSPVSSSHSTEDSSQQSHDESNWDNS 639


>03_02_0339 - 7623897-7625837
          Length = 646

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 145 ENEPWLWLLVDRVKRQHAGQRRRITHSVHNLRLL 44
           +NEP L+L+ D + R H G       + HNL  L
Sbjct: 145 QNEPILFLIWDHIARLHTGNLAARADAAHNLASL 178


>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 451 WRGWIDLERARWAPGCLELARRE 519
           W  W  + R  W+PGC  L+ RE
Sbjct: 403 WMSWNYVRRILWSPGCSLLSARE 425


>11_04_0281 +
           15733505-15733647,15734366-15734443,15734835-15735077,
           15735868-15736012,15736234-15736293,15736376-15736471,
           15736651-15737067,15737824-15737964,15738043-15738213,
           15738394-15738651,15738741-15738889,15739060-15739557,
           15740147-15740420,15740631-15740696,15740891-15741057,
           15741413-15741497,15741673-15741732
          Length = 1016

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 466 DLERARWAPGCLELARREQRXKMQHYVIRSRGYNQ 570
           +L R  WAPG   ++ R  + K+  +  +  GYNQ
Sbjct: 403 ELLRKLWAPGRTPVSPRPFKTKLSRFAPQFSGYNQ 437


>06_03_0575 + 22431744-22432212,22432473-22433077
          Length = 357

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 421 GIRCELXHXPFESRSHGCCRVSDRRQAEGLCRYR*TLSPCVPRGNRS*IASGVLREPVSV 242
           GI  E  + P+E R+ G CR S +  A  +  ++      VP  N + +   V  +PVSV
Sbjct: 216 GIAAESDY-PYEDRALGTCRASGKPVAASIRGFQ-----YVPPNNETALLLAVAHQPVSV 269

Query: 241 S 239
           +
Sbjct: 270 A 270


>01_01_0591 -
           4401847-4402063,4402860-4403002,4403339-4403447,
           4403546-4404707,4405754-4405865,4405980-4406015
          Length = 592

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 306 GDSVYRYRHKPSACLRSLTLQQPWLRLSKGKWXSSHRIP 422
           G + YR R + S  LR+  +    L+L  G W ++ ++P
Sbjct: 55  GGAPYRLRRRNSETLRAQYINTKELKLCVGTWNAAGKVP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,838,765
Number of Sequences: 37544
Number of extensions: 434723
Number of successful extensions: 1191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)