Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0239
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)                    78   9e-15
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.58 
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)                     29   3.1  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     29   5.4  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  28   7.2  
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
          Length = 174

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSP---YNNRGCDFQKXNGKAHIVSRFI 429
           EER +RF +  R+G + +A+  +GTNL L F  +      +   DF +  GK HI S FI
Sbjct: 38  EERVVRFQTEIRDGQSNVAYVASGTNLTLHFPKAEDGFIRSEFLDFDREPGKVHIKSHFI 97

Query: 430 MNGVCVRWRGWIDLERARWAPGCLELARREQRXKMQHYVIRS--RGYNQRLRDFXDKQRG 603
           +NGVC+ ++GWIDL+R     G   +   E++ + +  ++R       QRL +F ++QR 
Sbjct: 98  LNGVCIIFKGWIDLQR---LDGIGYIEYDEEKARKEDKIMRETLEQAKQRLAEFEERQRQ 154

Query: 604 XR 609
            R
Sbjct: 155 WR 156



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 25/35 (71%), Positives = 34/35 (97%)
 Frame = +2

Query: 149 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           MPRVVP+QK KFE+D++F++L+RESE++YTGYRDR
Sbjct: 1   MPRVVPEQKQKFENDEMFRKLARESEIKYTGYRDR 35


>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 409 HIVSRFIMNGVCVRWRGWIDLER 477
           HI S FI+NGVC+ ++GWIDL+R
Sbjct: 2   HIKSHFILNGVCIIFKGWIDLQR 24


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 246 ETGSRRTPDAIHERLPRGTHGDSVYRYRHKPSACLRSLT 362
           E G   TP +  ++  RG  GDSV   RH P   LR+L+
Sbjct: 851 EDGKPSTPPSRSKKRTRGISGDSVSDNRHTPRRSLRNLS 889


>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
          Length = 611

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 525 SLLSPRQLKTARRPSSPFQIDPTSPSYT-NTVHDE 424
           S LS     ++ RPS   ++ PTSPSYT   VH +
Sbjct: 304 SPLSSSSSSSSPRPSRDIELPPTSPSYTPGRVHSD 338


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 531  LXSLLSPRQLKTARRPSSPFQIDPTSPSYTNTVHDESGYD 412
            + S +  + L++   P  PF +    P Y NTV D++ +D
Sbjct: 5732 IVSKVGHQSLQSTTLPPVPFALSTIRPLYYNTVDDDANWD 5771


>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 150 CHV*CPIKKPNSNQTISSKDLAEKVRLDTLDTETGSRRTPDAIHERLPRGTHGDSV 317
           C V C +  P+S +T+ +K LAE+     LD +   +   DA  +++   T  +++
Sbjct: 320 CKV-CVLGPPHSGKTLVAKQLAERYNAKVLDVDELIKPRRDAAKKKMLDETRDEAI 374


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +2

Query: 26  SVQAKL*EP*VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 205
           S +  L +P      S+    A   PF    E P+P    K+   +   K  F+ DDL  
Sbjct: 338 SDEKNLSKPESEQCSSEEESTAPKEPFYQTLEPPEPESPEKVSDPIQSSKQSFQKDDLLL 397

Query: 206 RLSRESEVRYTGY 244
               + E+   GY
Sbjct: 398 EDKPKEELNPEGY 410


>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 180 NSNQTIS-SKDLAEKVRLDTLDTETGSRRTPDAIHERLPRGTHGDSVYRYRHKPSACLRS 356
           N +Q+ + S D   +    +L    G  RTP    + +P G    S  R+  +PS+ LRS
Sbjct: 533 NESQSFTLSNDRPSQTPPTSLKHFPGDERTPPTSLKHVP-GDEQTSQVRFSSEPSSTLRS 591

Query: 357 LTLQ 368
           +T +
Sbjct: 592 VTFK 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,139,420
Number of Sequences: 59808
Number of extensions: 470274
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)