Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0239
         (766 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L20298-1|AAA02868.1|  175|Homo sapiens transcription factor prot...    85   2e-16
BT006862-1|AAP35508.1|  182|Homo sapiens core-binding factor, be...    85   2e-16
BC018509-1|AAH18509.1|  182|Homo sapiens core-binding factor, be...    85   2e-16
AF294326-1|AAG01553.1|  187|Homo sapiens core binding factor bet...    85   2e-16

>L20298-1|AAA02868.1|  175|Homo sapiens transcription factor
           protein.
          Length = 175

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPY--------NNRGCDFQKXNGKAHI 414
           EERQ RF + CR+G +EIAF  TGTNL L F  + +        +    D ++  GK ++
Sbjct: 31  EERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYL 90

Query: 415 VSRFIMNGVCVRWRGWIDLERARWAPGCLEL--ARREQRXKMQHYVIRSRGYNQRLRDFX 588
            +  I+NGVCV W+GWIDL+R     GCLE    R +Q   +           +R R+F 
Sbjct: 91  KAPMILNGVCVIWKGWIDLQRLD-GMGCLEFDEERAQQEDALAQQAFEEA--RRRTREFE 147

Query: 589 DKQRGXRXHGE 621
           D+ R  R   E
Sbjct: 148 DRDRSHREEME 158



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 26/28 (92%)
 Frame = +2

Query: 170 QKAKFESDDLFKRLSRESEVRYTGYRDR 253
           Q++KFE+++ F++LSRE E++YTG+RDR
Sbjct: 1   QRSKFENEEFFRKLSRECEIKYTGFRDR 28


>BT006862-1|AAP35508.1|  182|Homo sapiens core-binding factor, beta
           subunit protein.
          Length = 182

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPY--------NNRGCDFQKXNGKAHI 414
           EERQ RF + CR+G +EIAF  TGTNL L F  + +        +    D ++  GK ++
Sbjct: 38  EERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYL 97

Query: 415 VSRFIMNGVCVRWRGWIDLERARWAPGCLEL--ARREQRXKMQHYVIRSRGYNQRLRDFX 588
            +  I+NGVCV W+GWIDL+R     GCLE    R +Q   +           +R R+F 
Sbjct: 98  KAPMILNGVCVIWKGWIDLQRLD-GMGCLEFDEERAQQEDALAQQAFEEA--RRRTREFE 154

Query: 589 DKQRGXRXHGE 621
           D+ R  R   E
Sbjct: 155 DRDRSHREEME 165



 Score = 60.9 bits (141), Expect = 5e-09
 Identities = 23/35 (65%), Positives = 33/35 (94%)
 Frame = +2

Query: 149 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDR
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDR 35


>BC018509-1|AAH18509.1|  182|Homo sapiens core-binding factor, beta
           subunit protein.
          Length = 182

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPY--------NNRGCDFQKXNGKAHI 414
           EERQ RF + CR+G +EIAF  TGTNL L F  + +        +    D ++  GK ++
Sbjct: 38  EERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYL 97

Query: 415 VSRFIMNGVCVRWRGWIDLERARWAPGCLEL--ARREQRXKMQHYVIRSRGYNQRLRDFX 588
            +  I+NGVCV W+GWIDL+R     GCLE    R +Q   +           +R R+F 
Sbjct: 98  KAPMILNGVCVIWKGWIDLQRLD-GMGCLEFDEERAQQEDALAQQAFEEA--RRRTREFE 154

Query: 589 DKQRGXRXHGE 621
           D+ R  R   E
Sbjct: 155 DRDRSHREEME 165



 Score = 60.9 bits (141), Expect = 5e-09
 Identities = 23/35 (65%), Positives = 33/35 (94%)
 Frame = +2

Query: 149 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDR
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDR 35


>AF294326-1|AAG01553.1|  187|Homo sapiens core binding factor beta
           isoform PEBP2B protein.
          Length = 187

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
 Frame = +1

Query: 259 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPY--------NNRGCDFQKXNGKAHI 414
           EERQ RF + CR+G +EIAF  TGTNL L F  + +        +    D ++  GK ++
Sbjct: 38  EERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYL 97

Query: 415 VSRFIMNGVCVRWRGWIDLERARWAPGCLEL--ARREQRXKMQHYVIRSRGYNQRLRDFX 588
            +  I+NGVCV W+GWIDL+R     GCLE    R +Q   +           +R R+F 
Sbjct: 98  KAPMILNGVCVIWKGWIDLQRLD-GMGCLEFDEERAQQEDALAQQAFEEA--RRRTREFE 154

Query: 589 DKQRGXRXHGE 621
           D+ R  R   E
Sbjct: 155 DRDRSHREEME 165



 Score = 60.9 bits (141), Expect = 5e-09
 Identities = 23/35 (65%), Positives = 33/35 (94%)
 Frame = +2

Query: 149 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 253
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDR
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDR 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,810,219
Number of Sequences: 237096
Number of extensions: 2158387
Number of successful extensions: 8919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8915
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)