Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0239
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    29   3.6  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    28   6.3  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      28   6.3  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 494 AVLSWRGESSDXRCSIT*SDREXTIN-GYVIXKTSSGDXAXTAXS 625
           AVL+  G+S D +CSIT +DR    + G  + +  SG  A T  S
Sbjct: 424 AVLTTAGQSQDDQCSITSADRTSIASMGSTLRRFGSGTSAATVFS 468


>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 165 GTTRGILKMNLGFGCS*IESKGNMPAN-GEGSLIACIT 55
           GTTRG +K+N+ FG   + +  +   N G+ +   C T
Sbjct: 343 GTTRGSIKLNVAFGARIMSTSQDKEVNEGDNAFFHCAT 380


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 SNQTISSKDLAEKVRLDTLDTETGSRRTPDAIHERLPRGT 302
           S  T++  D A  V +D + T T +   P  +HE+ P GT
Sbjct: 691 SANTMTRSDGATTVPMDNIITPTYAILNPILVHEQTPNGT 730


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 SNQTISSKDLAEKVRLDTLDTETGSRRTPDAIHERLPRGT 302
           S  T++  D A  V +D + T T +   P  +HE+ P GT
Sbjct: 689 SANTMTRSDGATTVPMDNIITPTYAILNPILVHEQTPNGT 728


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +3

Query: 216 EKVRLDTLDTETGSRRTPDAIHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPWLRLSKG 395
           E+VR D L +  GSRRT     ++     H     R   +    L+    QQ W   S+G
Sbjct: 650 EQVREDDLRSHIGSRRTSVNGDDQNVESMHDQGYERQYPRQHQRLQKDD-QQRWKTGSRG 708

Query: 396 KWXSSHRIPIHHE 434
              SS  I +H +
Sbjct: 709 DIHSSRTINVHRD 721


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 SNQTISSKDLAEKVRLDTLDTETGSRRTPDAIHERLPRGT 302
           S  T++  D A  V +D + T T +   P  +HE+ P GT
Sbjct: 689 SANTMTRSDGATTVPMDNIITPTYAILNPILVHEQTPNGT 728


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,694,864
Number of Sequences: 27780
Number of extensions: 334736
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)