Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0239
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 31 1.1
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 30 1.5
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 30 1.5
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 2.6
At5g43660.1 68418.m05336 expressed protein similar to unknown pr... 29 3.4
At3g60910.1 68416.m06814 expressed protein low similarity to PIR... 28 5.9
At5g50100.1 68418.m06204 expressed protein contains Pfam domain ... 28 7.8
At4g22890.3 68417.m03307 expressed protein 28 7.8
At4g22890.2 68417.m03306 expressed protein 28 7.8
At4g22890.1 68417.m03305 expressed protein 28 7.8
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 466 DLERARWAPGCLELARREQRXKMQHYVIRSRGYNQ 570
DL R WAPG +A R + K+ + + GYNQ
Sbjct: 371 DLLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQ 405
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 466 DLERARWAPGCLELARREQRXKMQHYVIRSRGYNQ 570
DL R+ WAPG +A R + K+ + + G+NQ
Sbjct: 84 DLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQ 118
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 466 DLERARWAPGCLELARREQRXKMQHYVIRSRGYNQ 570
DL R+ WAPG +A R + K+ + + G+NQ
Sbjct: 84 DLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQ 118
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 449 DGEVGSIWNGLDGRRAVLSWRGESSDXRCSIT*SDREXTINGYVIXKTSSGDXAXTAXSL 628
D S W G DG + S G S RC +T D + +I + K + + +A
Sbjct: 2 DPRNSSAWGGGDGLPLISSMGGVESKNRCCVT--DDDGSIGTKLCEKPKAEEIDFSARKK 59
Query: 629 RSHSQRGXAXS 661
+ S++G + S
Sbjct: 60 KLKSKKGGSVS 70
>At5g43660.1 68418.m05336 expressed protein similar to unknown
protein (gb|AAB72163.1)
Length = 361
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 167 DQKAKFESDDLFKRLSRE---SEVRYTGYRDRLPKN 265
++KAKF SD L K +SRE +R+ YR+ + N
Sbjct: 48 EEKAKFMSDILHKYISREECAKAIRFKNYREWIMSN 83
>At3g60910.1 68416.m06814 expressed protein low similarity to
PIR|I46078 endothelin converting enzyme from Bos
primigenius taurus
Length = 252
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 77 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 205
P GMLP D + E P FI+ + D++A+ S L +
Sbjct: 207 PITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQLPSYPLME 249
>At5g50100.1 68418.m06204 expressed protein contains Pfam domain
PF04134: Protein of unknown function, DUF393
Length = 214
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 265 RQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGCDFQKXNGKAHIV 417
R++ + E H I F +N D+SP +N+G D++ G+ H +
Sbjct: 88 REVNMLMERNEKHGTIKFVDISSN-----DYSPEDNQGLDYKTVMGQIHAI 133
>At4g22890.3 68417.m03307 expressed protein
Length = 324
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 531 LXSLLSPRQLKT-ARRPSSPFQIDPTSPS 448
L SL SPR +R+PSS F P SPS
Sbjct: 6 LFSLTSPRLFSAVSRKPSSSFSPSPPSPS 34
>At4g22890.2 68417.m03306 expressed protein
Length = 324
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 531 LXSLLSPRQLKT-ARRPSSPFQIDPTSPS 448
L SL SPR +R+PSS F P SPS
Sbjct: 6 LFSLTSPRLFSAVSRKPSSSFSPSPPSPS 34
>At4g22890.1 68417.m03305 expressed protein
Length = 324
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 531 LXSLLSPRQLKT-ARRPSSPFQIDPTSPS 448
L SL SPR +R+PSS F P SPS
Sbjct: 6 LFSLTSPRLFSAVSRKPSSSFSPSPPSPS 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,956,113
Number of Sequences: 28952
Number of extensions: 321093
Number of successful extensions: 874
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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