Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0238
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    28   1.7  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    27   2.9  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   3.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   9.0  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   9.0  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    25   9.0  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   9.0  

>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   FGTSWNIHFLYNISYLLPVHQQTLVFHPWR 94
           F T WN  F Y I Y   +    +V H WR
Sbjct: 125 FATGWNYFFKYAIVYPTNLTAVGIVIHYWR 154


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 521 VTTSTQP*SWPRRDLRQVMLRYFCTSSLTTVTARSSKPF 637
           +T  ++  +WP  ++R+  L+YF     T V + S  P+
Sbjct: 1   MTAESEVVNWPANEIRRTFLKYFEDHGHTIVPSSSVIPY 39


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 704 QNSLSARMSSRPACPSTVEMPNEKACLNAL*PS*ENWYRNTGASP 570
           +N LS      P CPST   P+    L+    S  N Y N+G  P
Sbjct: 300 ENPLSISSRPSPCCPST---PSSAVTLSNGFDSQSNAYNNSGTGP 341


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 617 ARSSKPFHLAFQRCWDTRDDLTYV 688
           A SSKP      R W + DD+ YV
Sbjct: 365 ADSSKPIVSQIYRIWKSDDDINYV 388


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 186 FDQSIFCWLHSVFQP 142
           F  S+ CW H+ FQP
Sbjct: 281 FPSSVQCWFHTHFQP 295


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 458 FDSRPKQSSQESMSTVDWK 402
           F S PK S    + TVDWK
Sbjct: 227 FKSSPKHSKTSCIRTVDWK 245


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 304 NQGYVFTAAL-LDQNIWISSNIVVIPGCXV 218
           N G  F   + +  N+WI   ++V+PG  +
Sbjct: 142 NSGIEFGLPINIQDNVWIGMGVIVLPGVTI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,894
Number of Sequences: 5004
Number of extensions: 74242
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)