Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0238
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0462 + 3332464-3332470,3333606-3335806                           30   1.8  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   4.1  
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    28   7.1  
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48...    28   9.4  
07_03_0859 + 22054087-22055421                                         28   9.4  
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723           28   9.4  
01_05_0528 - 22976627-22976833,22976944-22976992,22977052-229770...    28   9.4  

>02_01_0462 + 3332464-3332470,3333606-3335806
          Length = 735

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 392 ILVPSNLLYSSTPETIALVSN----QISQRYFNGSVDLEGFINCVPIV 523
           +++ SN L  S P + A +       I   Y NGS+ LE F NC  ++
Sbjct: 255 LVLSSNRLVGSLPPSFARMQQLSFFAIDNNYINGSIPLEMFSNCTQLM 302


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 462 LI*FETKAIVSGVDEYSRLEGTKIAGFSLILDTISICSNLRW 337
           L+ +  K   S  D  + +  TK+AG  +++  ++  +N RW
Sbjct: 112 LLRYSDKPFFSAYDASTNISYTKLAGDQIVVQNVTTMNNTRW 153


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 549 QLHGWVLVVTIGT-QLIKPSRSTLPLKYLWLI*FETKAIVSGVDEYSRLEGTKIAGFSLI 373
           + HGWVL  +IG+  +I P  + L   ++ L    TK I+ G    +  +G +  G  L 
Sbjct: 175 ETHGWVLEKSIGSGTIIDPDGTILTCAHVVLDFQSTKPILRGKVSVTLQDGREFEGTVLN 234

Query: 372 LD 367
            D
Sbjct: 235 AD 236


>09_01_0028 +
           486800-486890,486928-488009,488825-489190,489342-489692
          Length = 629

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 512 VPIVTTSTQP*SWPRRDLRQVMLRYFCT--SSLTTVTARSSKPFHLAFQRCWDTRDDL 679
           +P+VT+  +    P   L+ +     CT  + +    + + K +H+A QR     DDL
Sbjct: 543 LPLVTSIGEQMQLPPESLKLIRYTNMCTKFTHIAKDASSNEKAYHMALQRTSSMTDDL 600


>07_03_0859 + 22054087-22055421
          Length = 444

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 658 APLKCQMKRLA*TRCNRRKRTGTEIPEHHLPQISSRP 548
           A L+  +KRLA  RC RR+R     P    P  ++RP
Sbjct: 2   ANLQFLLKRLAKLRCFRRRRRRAAKPNAATPSPAARP 38


>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
          Length = 757

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 389 AILVPSNLLYSSTPETIALVSN----QISQRYFNGSVDLEGFINC 511
           A+ +  N L  S P + A +       I   Y NGS+ LE F NC
Sbjct: 294 ALYLSRNRLVGSLPPSFARMQQLSFFAIDSNYINGSIPLEIFSNC 338


>01_05_0528 -
           22976627-22976833,22976944-22976992,22977052-22977077,
           22977201-22977276,22977432-22977529,22977986-22978066,
           22978244-22978315,22978468-22978498,22978513-22979246
          Length = 457

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +3

Query: 405 PIYCTHRLLRRLLWSRIKSAKDTSMVA*IWRALSIVYR*LLQVPSHEVGREEICGR*CSG 584
           P+    RL RRL W R +  + +S+       L ++   L  +  H  G+       C  
Sbjct: 185 PLLSARRLFRRLAWHRARQVESSSLYPFFHSTLLLLSSNLRSIHVHGSGKLLGIANRCGN 244

Query: 585 ISVPVLLRRLQRVQASL 635
           + V  L   ++ ++A L
Sbjct: 245 LQVMQLDEPIEGLRAFL 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,534,733
Number of Sequences: 37544
Number of extensions: 473553
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)