Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0238
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)                31   1.3  
SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)                29   3.1  
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               28   7.2  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           28   7.2  

>SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)
          Length = 654

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 682 CQVVPRVPAPLKCQMKRLA*TRCNRRKRTGTEIPEH----HLPQISSRPT 545
           C  + + P  ++C   +L+   CN RK      PE+    HLP+ SSR T
Sbjct: 406 CYTLKQAPLRMRCTHSKLSIALCNLRKYPQPLPPEYQYFSHLPKESSRKT 455


>SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)
          Length = 677

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -2

Query: 349 KSTLEHMAFRIRETYNQGYVFTAALLD 269
           K++ +H+ +  RE ++ GYVF+ +++D
Sbjct: 442 KNSKDHLNYMFREPFSAGYVFSMSMID 468


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 131 EFLVYLIRISGVDAKDGKQEFVDGLGEDRRCCKESGCSSSCR 6
           + +V+L    GV  K+    F    GEDR C K +G +  C+
Sbjct: 518 DLIVHLKAAHGVIFKEETHHFSCYTGEDRMCAKPAGNNWMCK 559


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/30 (33%), Positives = 23/30 (76%)
 Frame = +3

Query: 111 DEIHEKLVAMPVEKLNEANRILIDQIGLTT 200
           D+IH+  ++M +++ +EAN++  D++GL +
Sbjct: 527 DDIHKLKMSMGMKESSEANQVEYDRVGLAS 556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,578,393
Number of Sequences: 59808
Number of extensions: 537383
Number of successful extensions: 1475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)