Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0238
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   1.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.5  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 499 LYQLCTDSYYKYPAMKLAEKRSAAGDAPVFLYQFSYDGYSAFKQAFSFGISTVLG 663
           L  + +D ++     K A  ++     PV+ Y ++Y G  +  +  S G S   G
Sbjct: 408 LIDVASDRFFITDGEKAARMQAKVNRQPVWFYYYTYKGAHSISEIMS-GTSNKYG 461


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 499 LYQLCTDSYYKYPAMKLAEKRSAAGDAPVFLYQFSYDGYSAFKQAFSFGISTVLG 663
           L  + +D ++     K A  ++     PV+ Y ++Y G  +  +  S G S   G
Sbjct: 408 LIDVASDRFFITDGEKAARMQAKVNRQPVWFYYYTYKGAHSISEIMS-GTSNKYG 461


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -3

Query: 339 WNIWHSEFVKPIIKGMSLPRP--CWTRIFGFHLI*W 238
           WN  + + +K I KG  LP P  C   I+   L  W
Sbjct: 840 WNWSNQDVIKSIEKGYRLPAPMDCPEAIYQLMLDCW 875


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 100 ELTPRMENKSLLMDWEKIGDVVKK 29
           E+    E+K+ L  W K G  VKK
Sbjct: 218 EIDEGKESKTKLSQWRKDGGTVKK 241


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 311 FTNSECHMFQRRFEQ 355
           F +S+C + QRRFE+
Sbjct: 269 FGDSKCSLCQRRFEE 283


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 396 KIAGFSLILDTISIC 352
           K   F++ILDT SIC
Sbjct: 305 KFVLFTMILDTFSIC 319


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 169 LLASFSFSTGMATSFSCISSGLVELTPRMENKSLLMDWEKIGDVVKKVDVP 17
           ++++F  +         + SGLV     M +  LL    K   +VK+V++P
Sbjct: 127 IVSAFKIAVDKFDRLWVLDSGLVNNNQPMCSPKLLTFDLKTSKLVKQVEIP 177


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/56 (21%), Positives = 22/56 (39%)
 Frame = -3

Query: 429 GVDEYSRLEGTKIAGFSLILDTISICSNLRWNIWHSEFVKPIIKGMSLPRPCWTRI 262
           G+  +  L+   ++GF L+      C  + W    + F   I   +     CW +I
Sbjct: 438 GMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/56 (21%), Positives = 22/56 (39%)
 Frame = -3

Query: 429 GVDEYSRLEGTKIAGFSLILDTISICSNLRWNIWHSEFVKPIIKGMSLPRPCWTRI 262
           G+  +  L+   ++GF L+      C  + W    + F   I   +     CW +I
Sbjct: 491 GMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKI 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,176
Number of Sequences: 438
Number of extensions: 5042
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)