Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0238
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30900.1 68417.m04388 expressed protein                             29   4.5  
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom...    29   4.5  
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    28   5.9  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    28   7.8  
At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containi...    28   7.8  
At2g21610.1 68415.m02570 pectinesterase family protein contains ...    28   7.8  

>At4g30900.1 68417.m04388 expressed protein
          Length = 254

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 130 SFSCISSGLVELTPRMENKSLLMDWEKIGDV 38
           SF  +++ L E++PR   +S L+ W+ I  +
Sbjct: 74  SFQIVNTNLDEISPRARRRSALLTWQHIASL 104


>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
           homeodomain transcription factor (AGL30) GI:3461830 from
           [Arabidopsis thaliana]; contains Pfam domain PF00319:
           SRF-type transcription factor (DNA-binding and
           dimerisation domain);  PMID: 12837945
          Length = 389

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = -2

Query: 178 INILLASFSFSTGMATSF----SCIS---SGLVELTPRMENKSLLMDWEKIGDVVKKVD 23
           I+I+L  FS  TG AT+F    SCI    S   +LTP+   K  L   E +    KK+D
Sbjct: 41  IDIVLLMFS-PTGRATAFHGEHSCIEEVISKFAQLTPQERTKRKLESLEALKKTFKKLD 98


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 449 RPKQSSQESMSTVDWKELRLLDFH 378
           R ++ ++ +M TVDW  LR  D H
Sbjct: 803 RKRERTERTMDTVDWDALRCTDVH 826


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 169 LLASFSFSTGMATSFSCISSGLVELTPRMENKSLLMDW 56
           L   FSFS+      S  ++ L+     +EN SLL  W
Sbjct: 9   LFLFFSFSSSAIVDLSSETTSLISFKRSLENPSLLSSW 46


>At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 444

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 711 LDAEFTFSTYVKSSRVSQHR*NAK*KGLLERAVTVVRELV 592
           L+  F  + +VKSSR+ +       KGL+++AV ++  LV
Sbjct: 405 LEEAFNMNVFVKSSRIEEVISRLCEKGLMDQAVELLAHLV 444


>At2g21610.1 68415.m02570 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 352

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 127 FSCISSGLVELTPRMENKSLLMDWEKIGDVVKKVDVPARAEF 2
           FS I   +  + P + N  L   W K G   +KV +PA   +
Sbjct: 61  FSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPY 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,563
Number of Sequences: 28952
Number of extensions: 384994
Number of successful extensions: 1016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)