Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0237
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    38   6e-05
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   0.62 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.81 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   2.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   2.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 37.5 bits (83), Expect = 6e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%)
 Frame = +2

Query: 26   LKPFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRQNIGSRVEVLWDRP 205
            LK +TNY++    + S  +    +   ++  T + +P  P+ V         +   W  P
Sbjct: 1167 LKKYTNYSMEVLAYTSGGDGVRTTP--IHCQTEQDVPEAPIAVKALVMSTDSILASWKPP 1224

Query: 206  EVPXGVIRYXKLYYSPPXRPSXXSFXPXTRK 298
              P G++ Y  +YY P          P ++K
Sbjct: 1225 VEPNGIVEYYTVYYKPVSTDDKTEVKPTSQK 1255


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 0.62
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 212 VLRAGPTAPPRGSRCSDVPSLSE 144
           ++  GP  PP G  C++ P L +
Sbjct: 157 IIDPGPALPPTGFLCNNYPPLPQ 179


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 44  YNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVT 157
           Y  TF + +S  N  Y    Y+N   G G P P    T
Sbjct: 269 YGRTFTLSNSNTN--YNPGTYINKEAGGGSPGPYTNAT 304


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 59  YIWDSRLNKTYASSKYVNTTTG 124
           ++W + L   YAS K +NT  G
Sbjct: 207 HMWPADLEAIYASLKNLNTDHG 228


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -1

Query: 82  IQSAVPYVKRYIIVREWLQICKSSC 8
           ++ +VP   RY  + EW      +C
Sbjct: 49  VKDSVPMTCRYTFLLEWYHTLSKAC 73


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = +2

Query: 32  PFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVR 163
           P++    T+  W +    T   S  +N  +    P PP +++ +
Sbjct: 296 PYSAPGPTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQ 339


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 59  YIWDSRLNKTYASSKYVNTTTG 124
           ++W + L   Y S K +NT  G
Sbjct: 208 HMWPADLEAIYGSLKNLNTDHG 229


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 59  YIWDSRLNKTYASSKYVNTTTG 124
           ++W + L   Y S K +NT  G
Sbjct: 208 HMWPADLEAIYGSLKNLNTDHG 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,789
Number of Sequences: 336
Number of extensions: 1554
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)