Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0237
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.025
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.044
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.044
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.18 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.41 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   0.71 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.025
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = +2

Query: 26   LKPFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRQNIGSRVEVLWDRP 205
            LK +TNY++    + S        S  ++  T +  P  P+ +         + V W  P
Sbjct: 1146 LKKYTNYSMQVLAFTS--GGDGVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPP 1203

Query: 206  EVPXGVIRYXKLY 244
              P GVI    +Y
Sbjct: 1204 SQPNGVITQYTVY 1216


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.044
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = +2

Query: 20   TNLKPFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRQNIGSRVEVLWD 199
            T L+ +TNY I    +    +    +  Y  T   E +P  P  + V  +    + + W 
Sbjct: 1178 TGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTE--EDVPGSPADIKVVVSSPQALFISWL 1235

Query: 200  RPEVPXGVIRYXKLY 244
             P  P G+I    LY
Sbjct: 1236 PPLEPNGIITKYNLY 1250


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.044
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = +2

Query: 20   TNLKPFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRQNIGSRVEVLWD 199
            T L+ +TNY I    +    +    +  Y  T   E +P  P  + V  +    + + W 
Sbjct: 1174 TGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTE--EDVPGSPADIKVVVSSPQALFISWL 1231

Query: 200  RPEVPXGVIRYXKLY 244
             P  P G+I    LY
Sbjct: 1232 PPLEPNGIITKYNLY 1246


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +2

Query: 20  TNLKPFTNYNITFYIWDSRLNKTYASSKYVN--TTTGEGIPSPPLRVTVRQNIGSRVEVL 193
           T L   T Y    +  ++ ++     S+YV+   TT   +PS    V +     S + + 
Sbjct: 380 TGLNAVTTYRFQVFA-ENGVSALAGKSEYVDITVTTDASVPSLVSNVRITSVKSSELSIS 438

Query: 194 WDRPEVPXG 220
           WD P    G
Sbjct: 439 WDAPITEIG 447


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 41  NYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSP 142
           NYN  +  +++  N  Y   +Y N    E IP P
Sbjct: 93  NYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVP 126


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 121 RRRNTFAASESDGTSEHREPRGGAVGP 201
           RR+ TFAA E +   E ++P+   + P
Sbjct: 130 RRKKTFAAREDNDEEEAQKPKEQYIPP 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,754
Number of Sequences: 438
Number of extensions: 2247
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)