Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0237
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07771.2 68415.m00888 cytochrome c biogenesis protein-related       28   2.8  
At2g07681.1 68415.m00923 cytochrome c biogenesis protein, putati...    28   2.8  
At4g24790.1 68417.m03550 expressed protein ; expression supporte...    27   8.5  
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    27   8.5  

>At2g07771.2 68415.m00888 cytochrome c biogenesis protein-related
          Length = 256

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 53  TFYIWDSRLNKTYASSK-YVNTTTGEGIPSPPLRVTVR 163
           TF++WD+RL   + S   Y+     + +P  P  +++R
Sbjct: 118 TFWVWDARLTSVFISFLIYLGALRFQKLPVEPASISIR 155


>At2g07681.1 68415.m00923 cytochrome c biogenesis protein, putative
           strong similarity to cytochrome c biogenesis protein
           [Pisum sativum] GI:4850219, ABC-type heme transporter
           subunit [Oryza sativa (japonica cultivar-group)]
           GI:1395188; contains Pfam profile PF01578: Cytochrome C
           assembly protein
          Length = 256

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 53  TFYIWDSRLNKTYASSK-YVNTTTGEGIPSPPLRVTVR 163
           TF++WD+RL   + S   Y+     + +P  P  +++R
Sbjct: 118 TFWVWDARLTSVFISFLIYLGALRFQKLPVEPASISIR 155


>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -3

Query: 176 SRCSDVPSLSEAAKVFLRL*SCSRIYLTHMSY 81
           S CS   S   AA +F  L SCSR  L H SY
Sbjct: 718 SACSPPKSAKAAASLFFGLFSCSRRML-HKSY 748


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 104 YVNTTTGEGIPSPPLRVTVRQNI-GSRVEVLWDRPEVP 214
           +V  TT EG       ++ R  + G R+++ W RP+VP
Sbjct: 267 FVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQVP 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,450,359
Number of Sequences: 28952
Number of extensions: 130866
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)