Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0236
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1005 + 7968862-7969755                                           29   3.1  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    27   9.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    27   9.4  
04_01_0028 - 365949-366710,366778-366909,366952-366957                 27   9.4  

>01_01_1005 + 7968862-7969755
          Length = 297

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 348 EEAIKEPTPPDLFVPNQSXEAHNFVTGMKLXALCPQXHEDGATGHRLQGVQQLPFLVALD 527
           EEA++E  PPDL  P+    A  +    ++  L        A G R +GVQ+   +V  D
Sbjct: 126 EEAVREIHPPDLLGPHHHAIAAPWTVARRVVEL------QVAPGSRGRGVQEQRGVVGAD 179

Query: 528 DHADDYED 551
           D   +  D
Sbjct: 180 DRGVEIGD 187


>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 247  SRSCSAVG*RKISRAAVGPRRSRRTAP 167
            S  CS VG  K SRA VG    R T+P
Sbjct: 1177 SHICSGVGALKQSRAGVGAANQRLTSP 1203


>05_07_0332 -
           29332520-29332818,29333511-29333725,29334380-29334408,
           29334956-29335045,29335120-29335155,29335222-29336553,
           29337331-29337497,29337519-29337724,29337815-29338036,
           29338332-29338381,29338754-29338870,29339471-29339551,
           29339656-29339694,29340464-29340636,29340769-29340826,
           29340934-29340987,29341066-29341613,29341695-29341755,
           29342180-29342260,29342448-29342630,29342908-29343162,
           29343304-29343423,29343497-29344901,29344988-29345085,
           29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 22  SVSIEALNNKGLSPIDRIKVGMKVEVQNLIDPY 120
           S+ ++ L+N G+SP+  ++ G      NL+DP+
Sbjct: 404 SIHVDELDNSGISPVCAVESG--TVCTNLVDPH 434


>04_01_0028 - 365949-366710,366778-366909,366952-366957
          Length = 299

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 366 PTPPDLFVPNQSXEAHNFVTGMK--LXALCP 452
           P+P  + +PNQ+  A N V  +K  L A CP
Sbjct: 61  PSPERVAIPNQTLRALNIVNAVKSALEAACP 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,366
Number of Sequences: 37544
Number of extensions: 284788
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)