Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0236
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10198| Best HMM Match : MBT (HMM E-Value=0) 52 5e-07
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_45976| Best HMM Match : MBT (HMM E-Value=0) 36 0.028
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 36 0.036
SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026) 30 1.8
SB_27534| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
Length = 753
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = +1
Query: 73 IKVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDGCDEDLQQLWIFFSNPRLSSFGY- 249
+ +G +E+Q+ DP YW+A+V E G RL +RY G + + +W+++ + + G+
Sbjct: 184 VPIGTMLELQDYDDPLCYWVASVVERFGLRLKLRYAGAESEEHDVWVYYLSDNVHKLGWG 243
Query: 250 ----VTIRAHXGSSN 282
+T++A G +N
Sbjct: 244 KRYGLTLQAPKGLTN 258
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 19 QSVSIEALNNKGLSPIDRIKVGMKVEVQNL-IDPYRYWIATVCEXVGXRLLVRYDGCDED 195
+SV A + +P + GMKVE ++ + YW+AT+ G LL+R+DG D
Sbjct: 55 KSVPKSAFKHVKENPTSGFRRGMKVEAKDYKSNSGTYWVATIIMVSGPLLLLRFDGYGND 114
Query: 196 -LQQLWIFFSNPRLSSFGY 249
+ W S P + G+
Sbjct: 115 RSEDFWCDASTPDVQPIGW 133
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 46 NKGLSPIDRIKVGMKVEVQNLIDPYRYWIATVCEXVGXRLLV 171
N L PI K GMK+E N DP +ATV V V
Sbjct: 286 NDQLPPIHGFKSGMKLEAVNPTDPSSICVATVSRVVNEHYFV 327
>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 QSVSIEALNNKGLSPIDRIKVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDGCDEDL 198
++ S E L P +R + GMKVEV + + Y +AT+ + +G RL +RYDG + D+
Sbjct: 260 KTFSAEFLQQLQDQPYNRFQKGMKVEVADRKNMYSMCVATIVDVIGDRLRLRYDGLEADV 319
Query: 199 -QQLWIFFSNPRLSSFGYVTIRAH 267
+ W + + + G+ ++ H
Sbjct: 320 AEDFWCHYLSSEIHPIGWSSLVGH 343
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = +1
Query: 73 IKVGMKVEVQN----LIDPYR--YWIATVCEXVGXRLLVRYDGC-DEDLQQLWIFFSNPR 231
+ VGMKVEV N ++D +W+ATV + R+L+RY+G D+D W +
Sbjct: 162 VHVGMKVEVVNCGMDVVDDTEVAFWVATVKQLRQHRVLLRYEGYEDDDSADFWFDLRSMN 221
Query: 232 LSSFGYVTIR 261
+ G+ R
Sbjct: 222 IHPVGWCAKR 231
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 76 KVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDGCDEDLQQL 207
++GMK+E +L +P ATV + G L + +DG D+ QL
Sbjct: 495 RIGMKLEAVDLREPALVCPATVTDVKGPLLRIHFDGWDDSYDQL 538
>SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 IKVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDGCDED-LQQLWIFFSNPRLSSFGY 249
+K GMK+E + +P + +ATV G R+ +RYDG D +W F L G+
Sbjct: 268 LKPGMKLEAVDRNNPPSFCVATVIRCSGHRVCIRYDGYGADSSNDIWCNFQADELHPIGW 327
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 70 RIKVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDG 183
+ K GMKVE +L +P +AT+ VG L + +DG
Sbjct: 487 KFKAGMKVEAVDLENPSSICVATITNIVGRVLQLFFDG 524
>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
Length = 839
Score = 35.9 bits (79), Expect = 0.028
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 49 KGLSPIDR-IKVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDGCDEDLQQLWIFFSN 225
K +SP K GMK+E + +P +ATV +G R LV +D D D W
Sbjct: 544 KPVSPTKHGFKTGMKLEAIDRKNPDLICVATVTNVIGNRFLVHFDEWD-DTYDYWCEEDC 602
Query: 226 PRLSSFGYVTIRAHXGSSNTP 288
P + G+ A+ G N P
Sbjct: 603 PYIHPVGWCA--ANGGKLNPP 621
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +3
Query: 366 PTPPDLFVPNQSXEAHNFVTGMKLXALCPQXHEDGATGHRLQGVQQLPFLVALDDHADDY 545
P P LF P S H F TGMKL A+ + + D + V FLV D+ D Y
Sbjct: 537 PAPSHLFKP-VSPTKHGFKTGMKLEAI-DRKNPDLICVATVTNVIGNRFLVHFDEWDDTY 594
Query: 546 E 548
+
Sbjct: 595 D 595
Score = 27.9 bits (59), Expect = 7.3
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +1
Query: 586 PYIYPIGWAQRHG 624
P+IYP+GW +++G
Sbjct: 498 PFIYPVGWCEKNG 510
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +1
Query: 76 KVGMKVEVQNLIDPYRYWIATVCEXVGXRLLVRYDGCDEDLQQLWIFFSNPRLSSFGYVT 255
K GMK+E + +P +ATV +G R LV +D D D W P + G+ +
Sbjct: 611 KTGMKLEAIDRKNPDLICVATVTNVIGNRFLVHFDEWD-DTYDYWCEEDCPYIHPVGWCS 669
Query: 256 IRAHXGSSNTP 288
A+ G N P
Sbjct: 670 --ANGGKLNPP 678
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 372 PPDLFVPNQSXEAHNFVTGMKLXALCPQXHEDGATGHRLQGVQQLPFLVALDDHADDYE 548
P LF P S H F TGMKL A+ + + D + V FLV D+ D Y+
Sbjct: 596 PEHLFTP-VSPTKHGFKTGMKLEAI-DRKNPDLICVATVTNVIGNRFLVHFDEWDDTYD 652
>SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 133 ATVCEXVGXRLLVRYDGCDEDLQQLWI---FFSNPRLSSFGYVTIR 261
A +C R LV +GCDE L WI F SNP LSS G IR
Sbjct: 301 AALCCCGNLRRLV-INGCDE-LPIKWISAVFISNPNLSSIGLCFIR 344
>SB_27534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 134 AIQYLYGSMRFCTSTFMPTLIL 69
A QYL +RFCTS F P L +
Sbjct: 298 AFQYLIVYLRFCTSLFNPVLYI 319
>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 28 SIEALNNKGLSPIDRIKVGMK--VEVQNLIDPYRYWIATV 141
S LNN+GLSP+ +K G ++V N + R WI +
Sbjct: 771 SFRHLNNRGLSPVLPVKSGSTSLLQVPNNAETPRTWIRPI 810
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,931
Number of Sequences: 59808
Number of extensions: 304421
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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