Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0236
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.47 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.47 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 174 PHQQPAXDXLAHSGYPISVWIDEILHFNLH 85
           PH Q +   LAHS YP ++ I    H + H
Sbjct: 440 PHHQHSTP-LAHSSYPAAIQIGHTPHHHPH 468



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 471 HRPHXPEGTGPXTSYLLRS 415
           H PH PE  GP    +L++
Sbjct: 465 HHPHPPETPGPQVETILQN 483


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 378 DLFVPNQSXEAHNFVTGMKLXALCPQXHEDGATGHRLQGVQQLPFLVA-LDDHADDYE 548
           +L V  +S   H+ + GM L  +    +    T H L  V   PF+ +  +++  +YE
Sbjct: 240 ELAVAGESFTVHDGIFGMALSPVTNNLYYSPLTSHSLYYVNMEPFMKSQYEENNIEYE 297


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 266  TXAVQIPRESEQVFVQEXTERSXPTXRRGGHQG 364
            T  VQ+P  +  ++V   T  S     + GH G
Sbjct: 1398 TLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNG 1430


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 266  TXAVQIPRESEQVFVQEXTERSXPTXRRGGHQG 364
            T  VQ+P  +  ++V   T  S     + GH G
Sbjct: 1394 TLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNG 1426


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 308  VQEXTERSXPTXRRGGHQGTHAA*SLRAKS 397
            +Q  T     T R  GH   H+A S+ A S
Sbjct: 923  IQVSTSAGLQTIRLSGHSVLHSAQSVVASS 952


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,997
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)