Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0232
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 107 1e-24
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 55 1e-08
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 55 1e-08
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 52 1e-07
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 44 3e-05
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 43 6e-05
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 42 7e-05
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 35 0.011
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 35 0.015
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 35 0.015
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 35 0.015
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 33 0.034
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 107 bits (258), Expect = 1e-24
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 63 KRLMREAIELAEATEEYC-ARPLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEYXXX 239
KRLM+E + L + E A+P +N+ EWH+ + GP T +EGG YHG ++ P +Y
Sbjct: 8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFK 67
Query: 240 XXXXXXXXXNGRFEINKKICLSISGHHPETWQPSWSIRTALLALIAFMPTPAEGRIGSLD 419
+GRF+ N ++CLS S HP++W PSW + T L+ L++FM T E G +
Sbjct: 68 PPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM-TSDEITTGGIV 126
Query: 420 YTPAERKILAKKSTNWS 470
+ + R+ AK + ++
Sbjct: 127 TSESTRRTYAKDTKRFN 143
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 55.2 bits (127), Expect = 1e-08
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Frame = +3
Query: 63 KRLMREAIELA-EATEEYCARPLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEYXXX 239
KR+++E L + A P EDNL + T++GP+ + +EGG +H + LP EY
Sbjct: 5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMM 64
Query: 240 XXXXXXXXXNGRFEINK--KICLSISGHHPETWQPSWSIRTALLALIAFMPTP 392
++K +ICLS + W P+ IRT LL++ A M P
Sbjct: 65 PPNVRFLTKIYHPNVDKLGRICLSTL---KKDWSPALQIRTVLLSIQALMGAP 114
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 54.8 bits (126), Expect = 1e-08
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Frame = +3
Query: 45 TKCPGVKRLMREAIELAE-ATEEYCARPL-EDNLFEWHFTVQGPKGTEFEGGIYHGRILL 218
+K ++RLM+E EL E + A P ED+ F W +QGP GT FEGG+Y +
Sbjct: 2 SKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKF 61
Query: 219 PKEYXXXXXXXXXXXXNGRFEINK--KICLSI---SGHHP-------ETWQPSWSIRTAL 362
P +Y + K +C+SI G P E W P S+ L
Sbjct: 62 PSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKIL 121
Query: 363 LALIAFMPTPAEGRIGSLD 419
L++++ + P + ++D
Sbjct: 122 LSVMSMLAEPNDESGANID 140
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Frame = +3
Query: 60 VKRLMREAIELAEATEEYC-ARPLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY-- 230
+KR+ RE +L + C A P+ D+LF W T+ GP + + GG++ I P +Y
Sbjct: 3 LKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 231 XXXXXXXXXXXXNGRFEINKKICLSISGHHPETWQPSWSIRTALLALIAFMPTP 392
+ N ICL I + W P+ +I LL++ + + P
Sbjct: 63 KPPKVNFTTRIYHPNINSNGSICLDIL---RDQWSPALTISKVLLSICSLLTDP 113
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Frame = +3
Query: 129 EDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY--XXXXXXXXXXXXNGRFEINKKICL 302
+ ++FEW + GP+ T +EGG +H + P++Y + N ++C+
Sbjct: 32 DKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCI 91
Query: 303 SISGHHP-----------ETWQPSWSIRTALLALIAFMPTPAEGRIGSLD 419
SI H P E W P S T L+++I+ + +P + ++D
Sbjct: 92 SIL-HPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANID 140
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 42.7 bits (96), Expect = 6e-05
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Frame = +3
Query: 60 VKRLMRE--AIELAEATEEYCARPLED-NLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY 230
+KRL +E + + + + +P+ D ++F W ++GP T +EGG + I + + Y
Sbjct: 5 IKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGY 64
Query: 231 XXXXXXXXXXXXNGRFEI---NKKICLSISGHHPETWQPSWSIRTALLALIAFM 383
I N ++C+ I H W P+WS+++A LA+I+ +
Sbjct: 65 PISPPSVYFQTKIVHPNISWTNGEVCMDILKTH---WSPAWSLQSACLAIISLL 115
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 42.3 bits (95), Expect = 7e-05
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +3
Query: 63 KRLMREAIELAE-ATEEYCARPLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY--X 233
+RL +E +L E + ++DNLF W T GP + + GG +H + P +Y
Sbjct: 10 RRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQ 69
Query: 234 XXXXXXXXXXXNGRFEINKKICLSISGHHPETWQPSWSIRTALLALIAFM--PTPAEGRI 407
+ F+ +CL+I + ++PS +R+ L ++ + P P + +
Sbjct: 70 PPTIEFTTRIYHPNFDSEGNVCLAIL--KQQVFKPSIKLRSVLEQILQLLREPNPDDPLV 127
Query: 408 GSL 416
S+
Sbjct: 128 ASI 130
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 35.1 bits (77), Expect = 0.011
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Frame = +3
Query: 66 RLMREAIELAEATEEYCAR----PLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEYX 233
R R A ELA+ ++ A + D++ +GP+GT +EGG + I +P +Y
Sbjct: 5 RSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYP 64
Query: 234 XXXXXXXXXXXNGRFEINKK---ICLSISGHHPETWQPSWSIRTALLALIAFMPTP 392
++ + ICL I + W P +++++AL++L + + TP
Sbjct: 65 FRPPKMNFDTKIYHPNVSSQTGAICLDIL---KDQWSPVYTMKSALISLQSLLCTP 117
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 34.7 bits (76), Expect = 0.015
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 135 NLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY--XXXXXXXXXXXXNGRFEINKKICLSI 308
+L W + G T +EGG+Y + P+EY + + +CLSI
Sbjct: 37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96
Query: 309 SGHHPETWQPSWSIRTALLALIAFMPTP 392
+ E W+P+ +I+ LL + + P
Sbjct: 97 L-NEEEGWKPAITIKQILLGIQDLLDDP 123
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 34.7 bits (76), Expect = 0.015
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +3
Query: 63 KRLMREAIELAEATEE-YCARPLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY--X 233
+RLMR+ + + A P+ DN+ W+ + GP T FE G + + ++Y
Sbjct: 7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNK 66
Query: 234 XXXXXXXXXXXNGRFEINKKICLSISGHHPETWQPSWSIRTALLALIAFMPTP 392
+ N ++CL I + W P++ + L ++ + + P
Sbjct: 67 PPLVKFVSTMFHPNVYANGELCLDILQNR---WSPTYDVAAILTSIQSLLNDP 116
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 34.7 bits (76), Expect = 0.015
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +3
Query: 63 KRLMREAIELAEA-TEEYCARPLED-NLFEWHFTVQGPKGTEFEGGIYHGRILLPKE--Y 230
KRL E + L + T A P D NL W T+ GP T +EG + + P Y
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 231 XXXXXXXXXXXXNGRFEINKKICLSISGHHPETWQPSWSIRTALLALIAFMPTP 392
+ +++ ICL I + W ++++T LL+L + + P
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDIL---KDKWSAVYNVQTILLSLQSLLGEP 141
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 33.5 bits (73), Expect = 0.034
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 108 EYCARPLEDNLFEWHFTVQGPKGTEFEGGIYHGRILLPKEY 230
+Y + DN+ E++ GP T + GGI+ + LP EY
Sbjct: 19 DYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEY 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,593
Number of Sequences: 5004
Number of extensions: 51250
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -