Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0231
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0619 - 4961588-4962409 43 3e-04
09_01_0032 - 541411-541737,542751-543752 29 4.0
05_07_0219 - 28474661-28475146,28475979-28476644 29 4.0
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 29 4.0
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 5.3
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 28 7.0
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 28 7.0
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 28 7.0
11_02_0147 - 8791117-8792502 28 7.0
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 28 7.0
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 28 7.0
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 7.0
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 9.3
>11_01_0619 - 4961588-4962409
Length = 273
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +1
Query: 181 RCQKCLEFGHWSYECKGKRKILVRPHVHESCIRI*KPKKKVNAAMAAARY 330
+CQKC + GHW+YECK +R + RP + ++ PK K AA + ++
Sbjct: 95 QCQKCFQPGHWTYECKNERVYISRPSRTQ---QLKNPKLKKTAAPVSYQF 141
>09_01_0032 - 541411-541737,542751-543752
Length = 442
Score = 29.1 bits (62), Expect = 4.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 181 RCQKCLEFGHWSYECKGKRK 240
RC+ CL++GH + +CK ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 178 IRCQKCLEFGHWSYECKGKRKI 243
I C++C +FGH++ EC RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 585 HQVQNSSENKHLPSSIEKNIKAYIFFLNRCQIQNH 481
HQV NSS +P +++K++ +F + R Q+ ++
Sbjct: 467 HQVINSSLGSVIPRNLQKSVLEGLFSIGRAQVSDY 501
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 178 IRCQKCLEFGHWSYECKGKRKI 243
I C +C +FGH++ EC RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 237 QDPSSSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREEDCKD 365
Q PS++ T + N + +EG + +P +KK++ K+
Sbjct: 240 QIPSTNMETNSLKMNDRVSKEGNITRNKVAVPPRKKKKSSVKE 282
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 237 QDPSSSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREEDCKD 365
Q PS++ T + N + +EG + +P +KK++ K+
Sbjct: 240 QIPSTNMETNSLKMNDRVSKEGNITTNKVAVPPRKKKKSSVKE 282
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 237 QDPSSSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREEDCKD 365
Q PS++ T + N + +EG + +P +KK++ K+
Sbjct: 240 QIPSTNMETNSLKMNDRVSKEGNITRNKVAVPPRKKKKSSVKE 282
>11_02_0147 - 8791117-8792502
Length = 461
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +1
Query: 172 QGIRCQKCLEFGHWSYECKGKRKILV---RPHVHESCIRI*KPKKKVNAAMAAARYP 333
Q I C KC + H S +CK ++ H E CIR K +KK A + P
Sbjct: 115 QRIFCSKCRSYSHLSRDCKLSVFCIIFAKETHRTEDCIR--KNQKKPVAKVVGCAAP 169
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 644 LFSYXPYFLTNFIYPSSNSXIGIVFESNY 730
L S YF +N +Y S NS + + E NY
Sbjct: 123 LLSKKDYFSSNAVYASVNSKVSVFDEENY 151
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 237 QDPSSSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREEDCKD 365
Q PS++ T + N + +EG + +P +KK++ K+
Sbjct: 148 QIPSTNMETNSLKMNDRVSKEGNITRNKVAVPPRKKKKSSVKE 190
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = -2
Query: 129 LMPVICSQSHIQNLKGKINKIRG*LNICLEL----YCSNCNRSSIKT 1
L V +++ I NLK K++ +RG LN +++ C +CN+ + T
Sbjct: 699 LEEVATAEADILNLKQKVSDLRGQLNNNVQMSSTSLCDSCNKRLLST 745
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 231 QTQDPSSSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREEDCKDCSDK 377
Q +DP S +RI H K +E + S+ + K R DC C DK
Sbjct: 69 QKKDPKFCSLSRIFHDQKKC-DEHKASSSPFSV--AKFRRWDCSKCLDK 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,438,670
Number of Sequences: 37544
Number of extensions: 249877
Number of successful extensions: 801
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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