Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0231
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 30 2.3
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_38090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54986| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 29 5.4
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 7.2
SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076) 28 7.2
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0) 28 9.5
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 291 KEEGQCSNGSCKIPNKKKREEDCKDCSD 374
K E QC+NG C NKK R + KDC+D
Sbjct: 90 KLEFQCANGRCI--NKKWRCDGMKDCAD 115
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 166 FPQGIRCQKCLEFGHWSYEC 225
+P RC +C E GH SYEC
Sbjct: 101 YPDKSRCYECGEGGHLSYEC 120
>SB_38090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 537 EKNIKAYIFFLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSNPPM 406
E N Y N+ +CC N+ +P+ CCC + N P+
Sbjct: 226 EDNAPVYCCMKNKDNAPIYCCMKNEDNAPV-CCC-MKNEDNAPV 267
>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1577
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 181 RCQKCLEFGHWSYECKGK 234
RC +CL H SYECK K
Sbjct: 357 RCFRCLRKNHRSYECKSK 374
>SB_54986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 261 TRIMHKNLKAKEEGQCSNGSCKIPNKKKREED 356
+ ++H+N + +EEG + IP KK R+E+
Sbjct: 14 SHLVHRNKRKQEEGNMDTAAEPIPVKKPRQEN 45
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 231 QTQDPSSSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREED 356
Q D SS++ +H+N+ A++EG C + + ++ +E+
Sbjct: 204 QRSDLIHSSQSEAVHRNVHAEDEGHIDEYGCGLHDNEQLDEE 245
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 510 FLNRCQIQNHCCSLNQTRSPIHC-CCHYQTSSNPPMTNQK 394
F N CQ++ C Q +PI C C T +PP + K
Sbjct: 41 FPNECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCK 80
>SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)
Length = 558
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 172 QGIRCQKCLEFGHWSYECKGKR 237
+G +C KC + GH++ CKG++
Sbjct: 41 RGKKCAKCFKSGHFAACCKGEK 62
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 510 FLNRCQIQNHCCSLNQTRSPIHC-CCHYQTSSNPPMTNQK 394
F N CQ++ C Q +PI C C T +PP + K
Sbjct: 1015 FPNECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCK 1054
>SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)
Length = 582
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -1
Query: 259 REDELGSC--VCPCTHSSSVQTP 197
+EDE+GS VCPC S++TP
Sbjct: 339 KEDEVGSTMKVCPCLPPVSIETP 361
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 504 NRCQIQNHCCSLNQTRSPIHC 442
N C HCC N T IHC
Sbjct: 25 NECSAFEHCCKGNCTAKRIHC 45
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 178 IRCQKCLEFGHWSYECKGK 234
+RC KC + GH++ C+ K
Sbjct: 185 VRCDKCTKVGHFAVVCRSK 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,115,625
Number of Sequences: 59808
Number of extensions: 309532
Number of successful extensions: 1441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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