Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0231
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    33   0.29 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    33   0.29 
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 184 CQKCLEFGHWSYECKGKRKIL 246
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 184 CQKCLEFGHWSYECKGKRKIL 246
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 GQTQDPSSSSRTRIMHKNLKAKEEG-QCSNGSCKIPN-KKKREEDCKDCSDK 377
           GQ    +         K  K  +   QCSNG+C   N     EEDC D SD+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWVCDGEEDCSDGSDE 197


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 GQTQDPSSSSRTRIMHKNLKAKEEG-QCSNGSCKIPN-KKKREEDCKDCSDK 377
           GQ    +         K  K  +   QCSNG+C   N     EEDC D SD+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWVCDGEEDCSDGSDE 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,914
Number of Sequences: 27780
Number of extensions: 241347
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)