Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0231
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    43   3e-04
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    29   3.4  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   5.9  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 181 RCQKCLEFGHWSYECKGKRKILVRP 255
           +CQKC + GHW+YECK +R  + RP
Sbjct: 99  QCQKCFQAGHWTYECKNERVYISRP 123


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
            dehalogenase-like hydrolase family protein /
            heavy-metal-associated domain-containing protein similar
            to cadmium efflux pump protein from Geobacillus
            stearothermophilus [GI:16753175], cadmium resistance
            protein B from Staphylococcus aureus [GI:14020985];
            T20K24.13 has been merged with T20K24.12 per suggestion
            of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 249  SSSRTRIMHKNLKAKEEGQCSNGSCKIPNKKKREEDCKDCSDK 377
            SS  T  + K +  K+EG C +GS  +   K+   + K CSD+
Sbjct: 922  SSENTPYLEKGVLIKDEGNCKSGSENMGTVKQSCHE-KGCSDE 963


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 184 CQKCLEFGHWSYECKGK 234
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,306
Number of Sequences: 28952
Number of extensions: 217926
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)