Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0229
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SD...    28   7.1  
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD...    28   7.1  
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD...    28   7.1  

>At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 287

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 121 LMRNWVCLVEHEXSRDXSKTNTNRNGSKDYGCSXSTYRYWCSKGAVQAKT 270
           L+  +VCL+  +  R  S  N +       G       Y CSKG V   T
Sbjct: 143 LISKYVCLLMRDAERGGSVINVSSISGLHRGLLRGGLAYACSKGGVDTMT 192


>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 276

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 121 LMRNWVCLVEHEXSRDXSKTNTNRNGSKDYGCSXSTYRYWCSKGAVQAKT 270
           L+  +VCL+  +  R  S  N +       G       Y CSKG V   T
Sbjct: 134 LISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGVDTMT 183


>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 277

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 121 LMRNWVCLVEHEXSRDXSKTNTNRNGSKDYGCSXSTYRYWCSKGAVQAKT 270
           L+  +VCL+  +  R  S  N +       G       Y CSKG V   T
Sbjct: 135 LISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGVDTMT 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,843
Number of Sequences: 28952
Number of extensions: 122429
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)