Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0228
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   4.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   6.9  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.2  

>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 381 CPNTITVGWPGQTRQTLPGLNPARSYALIG 470
           C ++  + WPG +RQ L  L+P   ++  G
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSPMLHFSFHG 323


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 39  NFIIKLSRV-SPFAALIN*QRKLHEA 113
           NF+ KLS + S  AAL+N QRKL +A
Sbjct: 509 NFLQKLSTLDSSLAALVNVQRKLIKA 534


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 401 WLARTDPADVARVESRT 451
           WL  TDP+ V+RVE  T
Sbjct: 419 WLQNTDPSTVSRVEVST 435


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 93  QRKLHEAFQDGVFYKERYEEMCSSGDWMQ 179
           Q  + + + + ++YK++YE+ C   + +Q
Sbjct: 402 QSSVSDLYSERLYYKQKYEQTCQEVERLQ 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,300
Number of Sequences: 5004
Number of extensions: 58652
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)