Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0228
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 32 0.58
02_02_0636 + 12463660-12465204 31 1.3
08_02_0116 + 12762009-12763021,12763421-12763436 30 2.4
08_02_0083 + 12063349-12063406,12066151-12066480,12066529-120671... 30 2.4
07_03_0001 + 12219741-12219927,12219976-12220955 30 2.4
04_04_0889 - 29105506-29106502,29106909-29107069,29107259-291073... 29 3.1
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 29 3.1
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 29 5.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 5.4
01_06_0545 + 30123621-30124142 29 5.4
03_05_0988 - 29458789-29459776,29459875-29460035,29460134-294602... 28 9.5
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 239 VASCGEGFVDPRRAVWWAARLHPI 168
V GEG +PRRA WW A H +
Sbjct: 51 VDDAGEGEANPRRAKWWYATFHSV 74
>02_02_0636 + 12463660-12465204
Length = 514
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 192 PNCSARVDEAFPTAGHSHXPKFARSWSAGMLCASRSTCTCATAPRQRRGHCYS*C 356
P S RVD+ GHS+ F +AG+L R + A+ R GH +S C
Sbjct: 260 PGASRRVDDVVFGCGHSNRGLF--HGAAGLLGLGRGALSFASQLRAVYGHAFSYC 312
>08_02_0116 + 12762009-12763021,12763421-12763436
Length = 342
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 144 NALYKKHHLEKPRAVF 97
N L K+HH+EKPR VF
Sbjct: 293 NGLRKEHHMEKPRTVF 308
>08_02_0083 +
12063349-12063406,12066151-12066480,12066529-12067174,
12089873-12089933
Length = 364
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 144 NALYKKHHLEKPRAVF 97
N L K+HH+EKPR VF
Sbjct: 300 NGLRKEHHMEKPRTVF 315
>07_03_0001 + 12219741-12219927,12219976-12220955
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 144 NALYKKHHLEKPRAVF 97
N L K+HH+EKPR VF
Sbjct: 232 NGLRKEHHMEKPRTVF 247
>04_04_0889 -
29105506-29106502,29106909-29107069,29107259-29107390,
29107484-29107645
Length = 483
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -1
Query: 315 SHTCTCSGWHRACLRSTNARTLGSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSLRNAL 136
S C GW R C + + T+ G++ +R+ Q + A+NR L SL +
Sbjct: 399 SFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANRQLRLSLPHHH 458
Query: 135 Y-KKHHLEKPRAV 100
+ HL P A+
Sbjct: 459 HLSPAHLSSPLAL 471
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 151 RCAQVAIGCSRAAHQTALRGSTKPSPQLATLTXQSSRVRGAQACS 285
RCA R++ A R +++P P++++ RGA+ CS
Sbjct: 252 RCASARAASRRSSAAPARRRASEPRPRVSSAMRVRGLARGARGCS 296
>07_01_0783 +
6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 606 WYHVHXAXFHTTRESVGHGLLVXRGGDVVPQXGFWPARAEGTTSXSRSEHMNVRDST 436
WY H A +T HG V + D + F A E T+ S S ++ +S+
Sbjct: 731 WYRQHQACLASTLSGFAHGTPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSS 787
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 142 VTKRCAQVAIGCSRAAHQTALRGSTKPSPQLATLTXQSSRVRGA 273
V CA A +RAA RG + Q +T SR RGA
Sbjct: 197 VVAECAAAAEAAARAAVDRIRRGEARQHAQAQVVTLAVSRFRGA 240
>01_06_0545 + 30123621-30124142
Length = 173
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 171 WMQPRRPPNCSARVDEAFPTAGHSHXPKFARSWSAGMLCAS 293
W+ PP + EAFP A H PK W A +L S
Sbjct: 3 WLPSSPPPPPPLTIGEAFPDARHLETPK----WIAALLLVS 39
>03_05_0988 -
29458789-29459776,29459875-29460035,29460134-29460271,
29460367-29460543
Length = 487
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 318 PSHTCTCS--GWHRACLRSTNARTLGSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSLR 145
P +C C GW R C + +A+TL RLR S+ GG A+ R + +R
Sbjct: 407 PGSSCHCREPGWFRVCFANMSAKTL----DVAMQRLRSFVDSATGGGDNAALRRAAVPVR 462
Query: 144 N 142
+
Sbjct: 463 S 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,920,165
Number of Sequences: 37544
Number of extensions: 461568
Number of successful extensions: 1426
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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