Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0228
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        83   2e-16
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       78   7e-15
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       48   1e-05
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  31   0.79 
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  31   0.79 
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)                    30   2.4  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   3.2  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_36042| Best HMM Match : Kinesin (HMM E-Value=0)                     29   5.5  
SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)                 28   7.3  
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 28   9.7  

>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = +2

Query: 242 SLPK-VRAFVERRHALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTD 418
           SLPK V+ FV     LCQP+ +H+CDGS  E ++            +L + +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213

Query: 419 PADVARVESRTFICSDREXDVVPSARAGQ 505
           P DVARVES+TFIC++ E D VP  + G+
Sbjct: 214 PGDVARVESKTFICTENERDAVPDFKKGK 242



 Score = 31.9 bits (69), Expect = 0.60
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +1

Query: 610 SMGPVGSPLSEDSGVEITDSPYV 678
           +MGPVGSP+++  G+++TDS YV
Sbjct: 321 NMGPVGSPIAK-IGIQLTDSEYV 342



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 514 LGNYISPPXYEKAVSDRFPGCMK 582
           LG ++S     +A+ +RFPGCMK
Sbjct: 249 LGRWLSVEKANQALGERFPGCMK 271


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +2

Query: 230 SWPLSLPKVRAFVERRHALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLA 409
           +W     KV+ FVE    L  P  +H+CDGS+ E +A             L +++NC+  
Sbjct: 10  NWDALPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAV 69

Query: 410 RTDPADVARVESRTFICSDREXDVVP--SARAGQKPXW 517
            TDP DVARVESRTFIC+  + D VP    + G+   W
Sbjct: 70  FTDPQDVARVESRTFICTKCKDDAVPHFKGKVGKLARW 107



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = +1

Query: 541 YEKAVSDRFPGCMKGRXMYVIPFSMGPVGSPLSEDSGVEITDSPYV 678
           ++K   +R+PGCM GR MYV+PFSMGPVGSP+S+  G+++TDS YV
Sbjct: 114 HKKLYEERYPGCMTGRTMYVLPFSMGPVGSPISK-IGIQLTDSEYV 158


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +1

Query: 592 MYVIPFSMGPVGSPLSEDSGVEITDSPYV 678
           MYV+PFSMGPVGSP+S+  G+E+TDS YV
Sbjct: 1   MYVMPFSMGPVGSPISK-IGIELTDSEYV 28


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 457 YERAGFNPGNVCRVCPGQPTVIVLGQ 380
           Y ++ FNP N CRVC    +  VLGQ
Sbjct: 32  YAKSLFNPNNFCRVCNANTSKRVLGQ 57


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 285  CASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLPG 437
            C   + C C T     RG  YS C      N C      GW    +Q +PG
Sbjct: 2297 CVGPNVCKCMTG-FLGRGCTYSYCGKYTRCNTCNQDPNCGWCDSAQQCMPG 2346


>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
          Length = 287

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 451 RAGFNPGNVCRVCPGQPTVIVLGQ 380
           ++ FNP N CR+C    +  VLGQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 204 QSSLVGGAAASNRHLSTSLRNALYKKHHLEKPRAVFVVNLSERQMEKHE 58
           +SSL+  + A ++H    LRN  Y K +LE P  +   N+S  +++  E
Sbjct: 382 RSSLLSCSVAYHKHSEEFLRNIKYWKQYLEDPDLIKNSNVSTVEIKIQE 430


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 279 MLCASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLP 434
           MLC    T        Q R H  + CS   PS+  P  +TVG P   R+  P
Sbjct: 406 MLCYLSITGAANAVYCQGRYHLSTECSHIDPSSSQPCQVTVGSPPDDRREYP 457


>SB_36042| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 292

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +1

Query: 532 PPXYEKAVSDRFPGCMKGRXMYVIPFSMGPVGSPLSEDSGVEITDSP 672
           P  YEK V +   GC+ G    V+ +     G   +  +G ++   P
Sbjct: 63  PEIYEKCVKELVEGCLDGYNATVLAYGQTGAGKTYTMGTGFDVNIDP 109


>SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 197 LLCEGRRSLPHSWPLSLPKVRAFVERRHALCQPEHVHVCDGSETEAR 337
           L+C G  S P+     L ++  +V+    +C   H+H+ D  E+E R
Sbjct: 23  LICTGTLSSPNVRASGLDELIHYVKPGGVICFTLHLHLYDNRESEYR 69


>SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)
          Length = 421

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 221 LPHS--WPLSLPKVRAFVERRHALCQPEHVHVCDGSETE 331
           LP S  W LS+ K+R F +R H L +  HV V   S+ +
Sbjct: 179 LPRSIRWNLSIEKLRDFKKRAHFLGRGNHVDVNGESQED 217


>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 1532

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +2

Query: 173  DAAAPPTKLLCEGRRSLPHSWPLSLPKVRAFVERRHAL 286
            D   P T+LL +GRR  PHS P S     AF  +R AL
Sbjct: 1350 DPHRPTTRLLPQGRRWRPHSRPSS-----AFRRQRFAL 1382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,577,197
Number of Sequences: 59808
Number of extensions: 505893
Number of successful extensions: 1244
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)