Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0228
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.3  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 721 WVXNSKSMTRIE-INPRKANP*FLRPNLRREEIPQDP 614
           W+   + + R   I P    P F+ PN  R   PQ+P
Sbjct: 137 WISIQEQIPRFRYIGPPTPFPRFIPPNAYRFRPPQNP 173


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 721 WVXNSKSMTRIE-INPRKANP*FLRPNLRREEIPQDP 614
           W+   + + R   I P    P F+ PN  R   PQ+P
Sbjct: 137 WISIQEQIPRFRYIGPPTPFPRFIPPNAYRFRPPQNP 173


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 721 WVXNSKSMTRIE-INPRKANP*FLRPNLRREEIPQDP 614
           W+   + + R   I P    P F+ PN  R   PQ+P
Sbjct: 375 WISIQEQIPRFRYIGPPTPFPRFIPPNAYRFRPPQNP 411


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 48  IKLSRVSPFAALIN*QRKLHEAFQDGVFYKERYEEMCSSGDWMQPRRPPN 197
           ++L R  PF+  I   RK+     D       YE+  S   + + R  PN
Sbjct: 74  MQLGRRQPFSLFIPAHRKIAARLIDIFMGMRTYEDFLSVAVYCRDRLNPN 123


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   SCNHTTRIYSYNFIIKLSRVSPFAALIN*QRKLHEAF 116
           +C+   + + YN ++KL +V+ +   +      HE F
Sbjct: 233 TCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETF 269


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 249 GSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSL 148
           G+E   L  + R    SSL    A+ + HLS++L
Sbjct: 261 GNEDANLLLKARLNPNSSLQPSLASHHSHLSSAL 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,103
Number of Sequences: 438
Number of extensions: 4363
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)