Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0228
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58360.1 68418.m07307 ovate family protein 69% similar to ova...    28   7.9  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      28   7.9  

>At5g58360.1 68418.m07307 ovate family protein 69% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 296

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 221 LPHSWPLSLPKVRAFVERRHALCQPEHVHVCDGSET 328
           +PHSW   L K  +   R+H L  P+H+   D S +
Sbjct: 16  MPHSWLYKL-KGMSRSSRKHHLSSPKHLSSADASSS 50


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +3

Query: 126  VFYKERY--EEMCSSGD--WMQPRRPPNCSARVDEAFP 227
            + Y++R+  +  C +GD  W+QP  PP   A +  + P
Sbjct: 1232 IIYRKRFAVDMRCFAGDQVWLQPATPPKGGASIGGSLP 1269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,133
Number of Sequences: 28952
Number of extensions: 335846
Number of successful extensions: 881
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)