Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0226
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      31   0.23 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    29   0.71 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.9  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   3.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   3.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   6.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.8  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 333 LIHLFQEYSKFFNPAINVLWVLLMIVGLSSAYFHATLSLVGQLLDELAILWV 488
           +  +F+    +FN  IN+L V L++  L  A+ +  L+     L+E+  LW+
Sbjct: 368 MFDIFEHIDSYFNHEINMLLVDLLLEPLQVAFVYKNLARRWISLEEIENLWL 419


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 647 CH*CERISCWMHYEKSSRHDRKYTGVQCQVFSCFLPKIS 531
           C   +RI CW  Y+ S   D   T V+  VFSCF P+++
Sbjct: 236 CSSLKRI-CWELYDPSRSLDETETDVE--VFSCFQPQLA 271


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 179 IHNVYQAICKIYYALTAFGDSFCCCIFNIYYAYILIKFY 63
           +H  + ++  +YY  T   D     +FN+ +AY+LI+ Y
Sbjct: 875 VHIFHASLYTLYYVETTGCDGDA--LFNLTFAYLLIRIY 911


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 285 FVNTVSNILFFLFPPVLIHLFQEYSKFFNP-AINV 386
           FVN++     F+ P +L H+F ++  +F+   IN+
Sbjct: 211 FVNSLKQTFIFMQPYLLSHMFPQFLVYFSEYTINI 245


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 82   TYLLNFIFKAH*NCTVVLIFFSSQNVV 2
            T+   F+FK H +CTV L  F S  V+
Sbjct: 2197 TFTPRFVFKNHLDCTVSLREFGSSKVL 2223


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 197 FKQCGHIWNVEALRWIGVNQLFHISFDSRIR 289
           F   GH   +  +RW G N ++  S+D  IR
Sbjct: 263 FTLSGHTAPITCVRWGGQNWIYSSSYDKTIR 293


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 360 KFFNPAINVL-WVLLMIVGLSSAYFHATLSL 449
           KF N A++V+ WV +     + +YF  TLS+
Sbjct: 679 KFDNQALSVIIWVCVFTCKFAESYFFLTLSI 709


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 226 HVPDVTTLFKLILILKYTMFIRQYVKFITH 137
           H P++ TL+++  + KYT+   +Y+    H
Sbjct: 79  HHPNIITLYQVFRVPKYTVLALEYMDTDLH 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,663
Number of Sequences: 5004
Number of extensions: 74280
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)