Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0226
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0800 - 27815322-27815838,27817549-27817805 54 2e-07
01_06_1673 + 39059483-39059611,39059851-39060032,39060247-390604... 30 1.7
07_03_0666 + 20508976-20509154,20509230-20509292,20511732-205119... 30 2.3
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 29 4.0
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684... 29 5.2
10_01_0087 - 1072279-1072762,1074884-1075020,1075379-1075479,107... 28 6.9
03_02_0309 - 7307241-7307715,7309383-7309591,7309730-7309830,730... 28 6.9
06_03_0683 - 23490215-23490997 28 9.2
03_06_0693 - 35592547-35592651,35592771-35592869,35593024-355930... 28 9.2
02_05_0616 - 30380558-30380822,30380914-30381045,30381138-303812... 28 9.2
02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174 28 9.2
>03_05_0800 - 27815322-27815838,27817549-27817805
Length = 257
Score = 53.6 bits (123), Expect = 2e-07
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +3
Query: 255 NYSISPLIAEFVNTVSNILFFLFPPVLIHLFQEYSKFFNPAINVLWVLLMIVGLSSAYFH 434
NY+ S IAEF NTVSN+ L L+ L + F +VL + MI+ + S FH
Sbjct: 23 NYAHSSYIAEFYNTVSNVPCVLL--ALVGLVNALRQGFEKRFSVLHISNMILAIGSMIFH 80
Query: 435 ATLSLVGQLLDELAILW-VFMAAFAISCLKYIFRNFWEETGEYLALYSSVFSVM 593
ATL V Q DE ++W + + + + + +R+ +L LY + F+V+
Sbjct: 81 ATLQHVLQQSDETPMVWEILLYLYVLYSPDWHYRS---TMPTFLFLYGAAFAVV 131
>01_06_1673 +
39059483-39059611,39059851-39060032,39060247-39060445,
39060532-39060693,39060920-39061222,39061343-39061603
Length = 411
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 339 HLFQEYSKFFNPAINVLWVLLMIVG--LSSAYFHATLS-LVGQLLDELAILWVFMAAFAI 509
H+F + FF N+L ++ M +G Y H ++ L+G+ + + V + F +
Sbjct: 99 HIFPHRTGFFGWFFNILGIIKMAIGPKYDGKYLHRLINDLLGETRMKETLTNVVIPTFDV 158
Query: 510 SCLK-YIFRNF 539
C+K IF F
Sbjct: 159 KCVKPIIFSTF 169
>07_03_0666 +
20508976-20509154,20509230-20509292,20511732-20511987,
20512183-20512326,20512464-20512525,20512743-20512905
Length = 288
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 285 FVNTVSNILFFLFPPVLIHLFQEYSKFFNPAINVLW 392
F+ T+SN+L L+ +L L +E SK N A+ + W
Sbjct: 150 FLITLSNVLAGLWTVLLGPLIEETSKLMNTALQISW 185
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +2
Query: 197 FKQCGHIWNVEALRWIGVNQLFHISFDSRIR*HCEQYFVLSVPTSVDSSFPRIFKILQSC 376
F + G++W+V + N L+ FD HC QYF +S VD P ++
Sbjct: 150 FNRTGNVWHVFIEGELH-NMLYGYRFDGMFAPHCGQYFDVS-NVVVD---PYAKAVISRG 204
Query: 377 YQCIMGSVDDCW 412
+ G DCW
Sbjct: 205 EYGVPGPGGDCW 216
>09_04_0204 -
15565684-15566223,15567272-15567678,15568143-15568446,
15568735-15570065,15570769-15570846,15570943-15571027
Length = 914
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 141 VINFTYCLINIVYFKIKINLNNVVTSGTWKLSGGLV*INYSISPLIAEFVNTVSNILFFL 320
V++ + + +I++ K K L + W L+ G+ I S+SP I E +N + F+L
Sbjct: 193 VVHMSVNIASILFTKAK-ELGMMSKGYAWILTDGISNIVNSLSPSILEEINGAIGVRFYL 251
Query: 321 FPPVLIHLF 347
+H F
Sbjct: 252 PASKELHDF 260
>10_01_0087 -
1072279-1072762,1074884-1075020,1075379-1075479,
1075581-1075806
Length = 315
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 222 TWKLSGGLV*INYSISPLIAEF 287
+W SGG +NY +P +AEF
Sbjct: 192 SWATSGGRYKVNYKYAPFVAEF 213
>03_02_0309 -
7307241-7307715,7309383-7309591,7309730-7309830,
7309918-7310149
Length = 338
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 222 TWKLSGGLV*INYSISPLIAEFVN 293
+W SGG +NY +P +AEF +
Sbjct: 218 SWATSGGRYKVNYKYAPYVAEFTD 241
>06_03_0683 - 23490215-23490997
Length = 260
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 123 SKGC*CVINFTYCLINIVYFKIKINLNNVVTSGTWKLSGGL 245
SKG V+N + +Y ++I+ + +T GTW +G L
Sbjct: 94 SKGVLKVVNSVHKRAEKIYMDVRIDPSPEITGGTWYRNGQL 134
>03_06_0693 -
35592547-35592651,35592771-35592869,35593024-35593094,
35594457-35595042
Length = 286
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 330 VLIHLFQEYSKFFNPAINVLWVLLMIVGLSSAYFHATL----SLVGQLLDELAILWVFMA 497
VLIH++ K F + LWV+ +VG Y SLVG +LD A LW
Sbjct: 128 VLIHIYVTPIKRF---LQALWVV-GVVGSIGTYVAGAQPLDESLVGYVLDHPAALWFVGP 183
Query: 498 AFA 506
FA
Sbjct: 184 TFA 186
>02_05_0616 -
30380558-30380822,30380914-30381045,30381138-30381279,
30381377-30381569,30381657-30381890,30381992-30382189
Length = 387
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 87 IVNIKYTAAKRISKGC*CVINFTYCLINIVYFKIKINLNNVVTSGTWKLSGG 242
I +K + KRI KG +I +YC + + K LN+V W ++GG
Sbjct: 278 IAALKISYLKRIGKGSNVIIMDSYCDSSKIVAK---TLNSVGFKNCWVMAGG 326
>02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174
Length = 340
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 216 SGTWKLSGGLV*INYSISPLIAEFVN 293
+ TW SGG +NY P +A F +
Sbjct: 204 ASTWATSGGRYRVNYRYGPFVASFTD 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,982,924
Number of Sequences: 37544
Number of extensions: 423055
Number of successful extensions: 805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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