Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0226
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17456| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_54203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_17456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +3

Query: 408 VGLSSAYFHATLSLVGQLLDELAILWVFMAAFAISCLKYIFRN 536
           VGL SAYFHATLSLVGQLLDELAILWV MAAFA+   +++F+N
Sbjct: 57  VGLCSAYFHATLSLVGQLLDELAILWVLMAAFALWAPRWLFQN 99


>SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -3

Query: 302 AHSVNEFCYQRRYGIIDSHQSTGELPRSRCDHIV*INFDFKIHNVYQA--ICKIYYALTA 129
           A+S+ +  Y   Y I D + +           I  + + F I  +Y A  I  +YYA + 
Sbjct: 257 AYSITDLYYA--YSITDLYYAYSITDLYYAYSITDLYYAFNITGLYYAYSIRDLYYADSI 314

Query: 128 FGDSFCCCIFNIYYAYILIKFYF 60
            G  +   I ++YYAY +   Y+
Sbjct: 315 TGLYYAYSITDLYYAYSIADLYY 337



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -3

Query: 266 YGIIDSHQSTGELPRSRCDHIV*INFDFKIHNVYQA--ICKIYYALTAFGDSFCCCIFNI 93
           Y I D + +  +       +I  + + + I ++Y A  I  +YYA +     +   I ++
Sbjct: 168 YSITDLYYADSKTVLWHAFNITGLYYAYSIRDLYYADSITNLYYAYSITDLYYTYSITDL 227

Query: 92  YYAYILIKFYF 60
           YYAY +   Y+
Sbjct: 228 YYAYSITDLYY 238



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 212 DHIV*INFDFKIHNVYQA--ICKIYYALTAFGDSFCCCIFNIYYAYILIKFYF 60
           D I  + + + I ++Y A  I  +YYA +     +   I ++YYAY +   Y+
Sbjct: 312 DSITGLYYAYSITDLYYAYSIADLYYAYSITDLYYAYSITDLYYAYSITDLYY 364


>SB_54203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 479 IVGIYGSIC--YFLPKIYFPKFLGGNRRILGTVLQCIFGHVDWISRNASSS*CVRINDTS 652
           I GI G++C  + L K     ++G  ++++G  L+   G VDW  +    S C R  D S
Sbjct: 245 IEGITGNLCVQFHLFKSGETHWIGATQQVIGEDLEWEGGIVDWNEQEKRKSLCSRQCDQS 304


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 455  SVIR*TCNIVGIYGSICYFLPKI-YFPKFLGGNRRILGTVLQCIFGHV 595
            +++R    +V  YG +   + +  Y P  L G+++  G VL  IF H+
Sbjct: 2127 AILRILAELVKTYGGVAQLITEYTYSPPSLPGDKQFEGPVLAYIFDHL 2174


>SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 84  GIVNIKYTAAKRISKGC*CVINFTYCLINIVYFKIKINL 200
           GI N   T AK++SK C  V++    + +  YFK++  L
Sbjct: 271 GITNWDSTHAKQLSKACYGVLSVLRKIKHFAYFKLRKQL 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,481,694
Number of Sequences: 59808
Number of extensions: 504496
Number of successful extensions: 1133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)