Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0225
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.9  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   5.2  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    26   6.8  
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    26   6.8  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   9.0  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 558 ENNVCVFKNEHITYFENSKYCRYIDARKTIQKVMFTLTVNGGNMFTST 415
           E+N  + K EH+ +FE   Y   +D  +TI K   TL   G  +  ST
Sbjct: 515 EDNAPIKKFEHLPFFEAEWYRVILDEAQTI-KNRNTLAARGCCLLEST 561


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 343 LKYLIINIPTYFLHYIII*SMIEYSRSKHVSAVNGQRKHHLLNCFSCI 486
           L  +II +PT     +++  M+ +S  K        R+ + ++C SCI
Sbjct: 85  LSGVIIGLPT-ITALVLLYPMLRFSTPKAAKGYTIYRRPYTMSCISCI 131


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 456 FTLTVNGGNMFTSTILNHRSYYNIMQEVGR 367
           FT++     +   T+L++R YY I QE  R
Sbjct: 748 FTVSQQVSTVLLRTLLDNRYYYGIRQEAAR 777


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 VESNR-HYYCKYEIIIFQRSITQISYYKYTYL 374
           VE N+ H+      I + R ++QI+YY Y+YL
Sbjct: 221 VEFNKKHHIGAVNSINWARILSQITYYLYSYL 252


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 504 KYCRYIDARKTIQKVMFTLTVNGGNMF 424
           K C Y+D+  T +K  FT  V  G  F
Sbjct: 32  KQCYYLDSFHTGEKTHFTYAVQSGGSF 58


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 672 NEITTLGYIWSLC*VKYQNLIVNKIAQIFVTAHSAVL*ENNVCVFK--NEHI 523
           NE+  L Y + +C   ++    NK+  +F   +   L ++ +C+FK  NE I
Sbjct: 403 NELEQLSYHFRICEKFFKESSENKMLNLFEDYNEFGLCKSFICLFKRLNEDI 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,303
Number of Sequences: 5004
Number of extensions: 61182
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)