Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0224
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.37 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   4.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +3

Query: 81  MPTEPQSPTPNSKTIFTTASSLPITTMPLKKXNRSTRTRRAKSSQMS*TNSYXTT 245
           +PT   S TP S    TTA+S   T  PL   N +T T  A S+ +S  NS   T
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNSTTAT 466



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 81  MPTEPQSPTPNSKTIFTTASSLPITTMPLKKXNRSTRT 194
           +PT   S TP S    TTA+S   T  PL   N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 78  YMPTEPQSPTPNSKTIFTTASSLPITTMP 164
           YMP  P +P PN+  IF   +  P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,498
Number of Sequences: 5004
Number of extensions: 33903
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)