Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0224
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673...    29   4.8  
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364...    29   4.8  
11_06_0232 + 21559467-21559532,21559586-21560200                       29   4.8  
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59...    29   4.8  

>11_06_0684 -
           26264540-26264661,26264926-26264989,26267168-26267371,
           26268322-26268456,26269174-26269492,26269581-26269631,
           26269721-26269864,26270080-26270160,26270252-26270302,
           26270392-26270535,26270750-26270833,26270912-26271055,
           26271147-26271196
          Length = 530

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 84  PTEPQSPTPNSKTIFTTASSLPITTMPLKKXNRSTRTRRAKSSQMS*TNSYXTTX*THGV 263
           PT+  SPT +S  +   A+S  ++ +   K  R    RR+ S     T +Y +   T+ +
Sbjct: 7   PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63

Query: 264 -RLPALDARLQGYR 302
            R   LD +  G++
Sbjct: 64  QRKRKLDEKRTGFQ 77


>11_06_0460 +
           23836034-23836083,23836175-23836318,23836397-23836480,
           23836695-23836838,23836928-23836978,23837070-23837150,
           23837366-23837509,23837599-23837649,23837738-23838056,
           23839994-23840062,23840378-23840698,23841218-23841583,
           23842241-23842304,23842569-23842690
          Length = 669

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 84  PTEPQSPTPNSKTIFTTASSLPITTMPLKKXNRSTRTRRAKSSQMS*TNSYXTTX*THGV 263
           PT+  SPT +S  +   A+S  ++ +   K  R    RR+ S     T +Y +   T+ +
Sbjct: 7   PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63

Query: 264 -RLPALDARLQGYR 302
            R   LD +  G++
Sbjct: 64  QRKRKLDEKRTGFQ 77


>11_06_0232 + 21559467-21559532,21559586-21560200
          Length = 226

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 99  SPTPNSKTIFTTASSLPITTMPLKKXNRSTRTRRAKSSQMS*TNSYXT 242
           +P P ++T    ASS P  T P +  +R  R RRA+++Q    +S  T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186


>05_01_0089 +
           589457-589506,589598-589741,589820-589903,590118-590261,
           590351-590401,590492-590641,591175-591488,592685-592815,
           593131-593451,594994-595057,595322-595443
          Length = 524

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 84  PTEPQSPTPNSKTIFTTASSLPITTMPLKKXNRSTRTRRAKSSQMS*TNSYXTTX*THGV 263
           PT+  SPT +S  +   A+S  ++ +   K  R    RR+ S     T +Y +   T+ +
Sbjct: 7   PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63

Query: 264 -RLPALDARLQGYR 302
            R   LD +  G++
Sbjct: 64  QRKRKLDEKRTGFQ 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,972
Number of Sequences: 37544
Number of extensions: 219944
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)