Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0224
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)                 33   0.30 
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   6.4  

>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
          Length = 635

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +2

Query: 104 DSKLEDDLYNSILVADYDNAVEKXKQIYEDKKSEVITNVVNKLIRNNKXNSWSTPTSSG 280
           DSK E D+ + + V  Y+ AV        DK S V+ ++ N L+ NNK    S PT+ G
Sbjct: 109 DSKDESDVLDMVYVL-YNEAVVCYNP---DKASAVLNHIENVLMVNNKQADTSQPTTQG 163


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 386 KARXXXLYISLMLFSAKISVNSTGKHSRTISLEPCIQS 273
           KA+    +     F++ +S   T  H R++S +PC+Q+
Sbjct: 556 KAKSEGFFRHKQSFASAVSSKKTAIHHRSVSEDPCVQT 593


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 87  TEPQSPTPNSKTIFTTASSLPITTMP--LKKXNRSTRTRRAKSSQ 215
           T P  PTP  K   +  +++P+T +P    K  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,088
Number of Sequences: 59808
Number of extensions: 263074
Number of successful extensions: 816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)