Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0224
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81046-4|CAB02825.1|  278|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 68  VASLYANGTSVSDSKLEDDLYNSILVADYDNAVE---KXKQIYEDKKSEV 208
           +  L  N + +  S  E D Y     ADYD  +E   + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299


>Z81046-4|CAB02825.1|  278|Caenorhabditis elegans Hypothetical
           protein C37E2.5 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 84  PTEPQSPTPNSKTIFTTASSLPITTMPLKKXN 179
           PT   + TP+S +  T  SSLP T+  L   N
Sbjct: 206 PTADNASTPSSSSSITATSSLPTTSSSLSVYN 237


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 84  PTEPQSPTPNSKTIFTTASSLPITT---MPLKKXNRSTRTRRAKSSQMS*TN 230
           PT  Q+ TP + TI TT   +P TT    PL+K N +     A  S M   N
Sbjct: 94  PTSTQTTTPTTTTITTT--PVPTTTPYLSPLEKFNEAMNNDGAFKSLMDVIN 143


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 77  LYANGTSVSDSKLEDDLYNSILVADYDNAVEK-XKQIYED--KKSEVITNVVNKLI 235
           +YA   S  D  LE DL+N   + +Y++ + K  KQ   D  KK E   NV+N+ I
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREI 373


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 93  PQSPTPNSKTIFTTAS-SLPITTMPLKKXNRSTRTR 197
           PQ P P  +T  T    +LP TT+P+   N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,273
Number of Sequences: 27780
Number of extensions: 194809
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)