Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0224
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    34   0.080
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    33   0.24 
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    31   0.98 
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    30   1.3  
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac...    28   5.2  
At3g18590.1 68416.m02363 plastocyanin-like domain-containing pro...    28   6.9  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 17  EPDAQKMKT-VQVILCLFVASLYANGTSVSDSKLEDDLYNSI--LVADYDNAVEKXKQIY 187
           + D  ++KT VQ I C+      A+ T++  SK  DDL   I  L+ D +  +E  +Q+ 
Sbjct: 709 DDDQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVA 768

Query: 188 EDKKSEVITNVVNKLIRNN 244
           E+  S     +      NN
Sbjct: 769 EENSSRAWGKIETDSSSNN 787


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = +2

Query: 14  REPDAQKMKTVQVILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKXKQIYED 193
           +E   ++++  Q  L  +    Y     +   KLED L  SIL     N+  K ++++  
Sbjct: 291 KEEKVRQLERAQRDLDRYTHYHYRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF-- 348

Query: 194 KKSEVITNVVNKLIRNNKXNSWSTP 268
           K+   I + VN+L R+ +  S+S P
Sbjct: 349 KEYSWIIDAVNRLFRSRRILSYSYP 373


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +2

Query: 32  KMKTVQVILCLFVASLYANGTSVSDSKL-EDDLYNSILVADYDNAVEKXKQIYEDKKSEV 208
           K KT Q +LC+   +++    S + +++  D++ + I+  DYD  V+    I  ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 209 ITNVVNKLIRNNKXNSWSTPTS 274
           +TN V+  + +   +S  TP+S
Sbjct: 458 LTNGVD--LSDVDLSSTFTPSS 477


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 80  YANGTSVSDSKLEDDLYNSILVADYDNAVEKXKQIYEDKKSEVITNVVNKLIRNNKXNSW 259
           Y     +   KLED L  SIL     N+  K ++++  K+   +T+ VN+L  + +  S 
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410

Query: 260 STP 268
           S P
Sbjct: 411 SYP 413


>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
           family protein contains Pfam profile PF00847: AP2 domain
          Length = 226

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 102 PTPNSKTIFTTASSLPITTMPLKKXNRSTRTRRAKSSQMS*TNSY 236
           P PN++  +    +  +TT+ ++K     R+RR +S  M   + Y
Sbjct: 36  PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80


>At3g18590.1 68416.m02363 plastocyanin-like domain-containing
           protein
          Length = 188

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 96  QSPTPNSKTIFTTASSLPITTMPLKKXN 179
           +SP P+S +  +++SSLP +T   KK N
Sbjct: 134 ESPPPSSSSSSSSSSSLPASTPKAKKSN 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,309
Number of Sequences: 28952
Number of extensions: 179808
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)