Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0223
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.0  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 96  KPPAVMVPIPQYPLFSGTLSELGVRQVDYYLDEEHDWALQILELERS 236
           +PP   + IP Y L S T   +G+ +   Y      +   IL  E S
Sbjct: 136 QPPPAHMGIPPYQLDSKTAGSMGLTRPPMYPFPAGQYPYPILSPEMS 182


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 96  KPPAVMVPIPQYPLFSGTLSELGVRQVDYYLDEEHDWALQILELERS 236
           +PP   + IP Y L S T   +G+ +   Y      +   IL  E S
Sbjct: 28  QPPPAHMGIPPYQLDSKTAGSMGLTRPPMYPFPAGQYPYPILSPEMS 74


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 QILELERSWREGQYDSNVRALVV 281
           Q++ELER +  G+Y S  R + +
Sbjct: 99  QLVELEREFHHGKYLSRPRRIQI 121


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 QILELERSWREGQYDSNVRALVV 281
           Q++ELER +  G+Y S  R + +
Sbjct: 90  QLVELEREFHHGKYLSRPRRIQI 112


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +3

Query: 15  PDDIYLGSGA------SDVIKSVLTLFVEDVGGKPPAVMVPIPQ 128
           P++I LG+G       + +    + L +   G  P  ++VPIPQ
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIALVLPTQGASPLPLLVPIPQ 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,881
Number of Sequences: 336
Number of extensions: 3711
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)