Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0223
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 119 4e-28
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 46 6e-06
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 36 0.008
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 34 0.019
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 29 0.54
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 27 3.8
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 26 5.1
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.1
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 119 bits (287), Expect = 4e-28
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Frame = +3
Query: 15 PDDIYLGSGASDVIKSVLTLFVEDVGGKPP-AVMVPIPQYPLFSGTLSELGVRQVDYYLD 191
P DIYL SGAS + ++TL + +P VMVP PQYPL+ + + V Y L
Sbjct: 163 PSDIYLTSGASHAARLIMTLII----ARPTDGVMVPAPQYPLYGAQIDLMSGSMVSYSLS 218
Query: 192 EEHDWALQILELERSWREGQYDS-NVRALVVINPGNPTGQVLTRANIEQIIKFAYERNLF 368
EE++W + + ++S+ E NVR VVINPGNPTG ++ ++E++++FA + +
Sbjct: 219 EENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIV 278
Query: 369 ILADEVYQENIVSKPFHSFKKVMFEM 446
+LADEVYQ NI FHSF++ + E+
Sbjct: 279 LLADEVYQNNIYQNKFHSFRRKLGEL 304
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 46.0 bits (104), Expect = 6e-06
Identities = 32/128 (25%), Positives = 62/128 (48%)
Frame = +3
Query: 6 PSNPDDIYLGSGASDVIKSVLTLFVEDVGGKPPAVMVPIPQYPLFSGTLSELGVRQVDYY 185
P PD+I +G G+ ++I S++ + + GK +M P P Y +++ + V V
Sbjct: 77 PLTPDNICMGVGSDEIIDSLIR--ISCIPGKDKILMCP-PSYGMYTVSAKINDVEVVKVL 133
Query: 186 LDEEHDWALQILELERSWREGQYDSNVRALVVINPGNPTGQVLTRANIEQIIKFAYERNL 365
L+ + + L ++ DS ++ +PGNPT + L +I++I++ N
Sbjct: 134 LEPDFN-----LNVDAICETLSKDSAIKVFFACSPGNPTAKALKLEDIKKILEHP-TWNG 187
Query: 366 FILADEVY 389
++ DE Y
Sbjct: 188 IVVVDEAY 195
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 LVVIN-PGNPTGQVLTRANIEQIIKFAYERNLFILADEVY 389
++VIN P NP G++ + + +I + NL +++DEVY
Sbjct: 180 MIVINTPHNPLGKIFSEEELNEIADLVLKHNLLVVSDEVY 219
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 34.3 bits (75), Expect = 0.019
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 129 YPLFSGTLSELGVRQVDYYLDEEHDWALQILELERSWREGQYDSNVRALVVINPG-NPTG 305
YP + LGV+ V +D E + E+ R W + L + G NPTG
Sbjct: 161 YPAAITAMRALGVQFVSVDMDSEGMLPESLEEIMRDW-DISLGPRPHVLYTVPTGQNPTG 219
Query: 306 QVLTRANIEQIIKFAYERNLFILADEVY 389
L+ + ++++ A + ++ I+ DE Y
Sbjct: 220 STLSLSRRKKLLALARKYDIIIVEDEPY 247
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 294 NPTGQVLTRANIEQIIKFAYERNLFILADEVYQ 392
NPTG T+A + I+K ++N F L D YQ
Sbjct: 220 NPTGVDPTKAQWDDILKTMQKKNHFALLDMAYQ 252
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 409 LLTMFSWYTSSAKMNKLRS*ANLMICSIFARVNTCPVGFPGLITTRARTLLSYWPSRQLL 230
LLT+F YT+ A +R A L+ ++ + PVG P ++TT +Y +Q +
Sbjct: 300 LLTLFCIYTA-AFYRSVRL-ARLLEYTLAITIIGVPVGLPAVVTTTMAVGAAYLAEKQAI 357
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 330 EQIIKFAYERNLFILADEVYQ--ENIVSKPFHSFKK 431
E+ + R LF ADEVYQ + + +KPF F++
Sbjct: 154 EEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 180 YYLDEEHDWALQILELERSWREGQYD 257
Y++DE L++ E E+S+R YD
Sbjct: 138 YWVDESQGRVLEVSENEKSYRRALYD 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,165
Number of Sequences: 5004
Number of extensions: 61116
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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