Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0223
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32349| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.00025)        126   2e-29
SB_58456| Best HMM Match : Transposase_23 (HMM E-Value=8.9)            93   2e-19
SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)            80   2e-15
SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06)           61   8e-10
SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)         47   1e-05
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)                     31   1.3  
SB_52846| Best HMM Match : ig (HMM E-Value=9e-12)                      30   2.3  
SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)                    30   2.3  
SB_47010| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.3)             29   3.1  
SB_3| Best HMM Match : Peptidase_C21 (HMM E-Value=5)                   29   4.1  
SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)                 28   9.5  
SB_53838| Best HMM Match : DUF745 (HMM E-Value=0.31)                   28   9.5  
SB_30762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)          28   9.5  

>SB_32349| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.00025)
          Length = 420

 Score =  126 bits (304), Expect = 2e-29
 Identities = 63/122 (51%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
 Frame = +3

Query: 6   PSNPDDIYLGSGASDVIKSVLTLFVEDV--GGKPPAVMVPIPQYPLFSGTLSELGVRQVD 179
           P+N +DIYL +GAS+ I+S+L L    V  G +   VM+PIPQYPL+S TL EL   Q++
Sbjct: 129 PANIEDIYLTNGASEGIRSILKLLQTHVSEGNERAGVMIPIPQYPLYSATLLELNSHQIN 188

Query: 180 YYLDEEHDWALQILELERSWREGQYDSNVRALVVINPGNPTGQVLTRANIEQIIKFAYER 359
           YYLDE + W+L I E+ R+  E +     RAL VINPGNPTGQVL+  NI+Q+I+F  E 
Sbjct: 189 YYLDEANGWSLDIDEMRRAINEARKHCVPRALCVINPGNPTGQVLSYENIQQVIRFCKEE 248

Query: 360 NL 365
            L
Sbjct: 249 KL 250


>SB_58456| Best HMM Match : Transposase_23 (HMM E-Value=8.9)
          Length = 130

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
 Frame = +3

Query: 87  VGGKPPAVMVPIPQYPLFSGTLSELGVRQVDYYLDEEHDWALQILELERSWREGQYDSN- 263
           +  K   +++PIPQYPL+S  +S  G     YY++E+  W L   ELERS  + +     
Sbjct: 2   ITSKDDGILIPIPQYPLYSAAISLYGGYAAPYYMNEQTGWQLDFSELERSIEDARKKGKK 61

Query: 264 VRALVVINPGNPTGQVLTRANIEQIIKFAYERNLFILADEVY 389
            +ALV+INPGNPTG +L+   I+++++F+ +  L ++ADEV+
Sbjct: 62  CKALVIINPGNPTGSILSEETIKKVLEFSVKNRLVVIADEVF 103


>SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)
          Length = 383

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 42/99 (42%), Positives = 62/99 (62%)
 Frame = +3

Query: 51  VIKSVLTLFVEDVGGKPPAVMVPIPQYPLFSGTLSELGVRQVDYYLDEEHDWALQILELE 230
           V+K+++T   E  G     VM+PIP+YPL+SG L EL   Q+ Y+L+E+ +W L++ EL+
Sbjct: 85  VLKALMTADQEGPGRA--GVMIPIPEYPLYSGRLLELNGYQIPYFLNEDDNWQLEMGELQ 142

Query: 231 RSWREGQYDSNVRALVVINPGNPTGQVLTRANIEQIIKF 347
           R+    +     RALV+INPGNPT Q  T A+    + F
Sbjct: 143 RALNSSRPHCVPRALVLINPGNPTVQSRTLASTYFYVAF 181


>SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06)
          Length = 277

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 39/131 (29%), Positives = 67/131 (51%)
 Frame = +3

Query: 3   VPSNPDDIYLGSGASDVIKSVLTLFVEDVGGKPPAVMVPIPQYPLFSGTLSELGVRQVDY 182
           +P +  DI + +G S+ +   L   ++        V++P P Y  ++G     GV+ V  
Sbjct: 85  LPIDKQDIIITTGGSEALLFALGSVMDS----DDEVIIPEPFYANYNGFAVASGVKVVPV 140

Query: 183 YLDEEHDWALQILELERSWREGQYDSNVRALVVINPGNPTGQVLTRANIEQIIKFAYERN 362
               E  +AL  +E      E    S  +A+++ NPGNPTG + +   I Q+ + A + +
Sbjct: 141 ISSIETGFALPPIEDF----EKLITSKTKAILICNPGNPTGYLYSEEEINQLAEIAKKHD 196

Query: 363 LFILADEVYQE 395
           LF++ADEVY+E
Sbjct: 197 LFLIADEVYRE 207


>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
          Length = 398

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 243 EGQYDSNVRALVVINPGNPTGQVLTRANIEQIIKFAYERNLFILADEVYQENIVSKPFH 419
           E ++ S  +A+V+  P NP G+V +R+ +E I       N+  ++DEVY+  + S   H
Sbjct: 206 ESKFSSKTKAMVINTPNNPLGKVFSRSELEMIANLCIRHNILCISDEVYEWLVYSGADH 264


>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
          Length = 1087

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 565 KNLQYNEVCHAVPLGFGDNAFLDCVMKPPSXRK-NLTQFSSSMRLETF 705
           KNL ++ VCH   LGF    +LD +  P + R  N+ Q  + + L+TF
Sbjct: 769 KNLTWHSVCHKSALGF----WLDFIPSPENSRAWNILQKQTFLPLKTF 812


>SB_52846| Best HMM Match : ig (HMM E-Value=9e-12)
          Length = 330

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 642 HHAIQKCIVPKTEGHCMTDLIILKVFCTDGW 550
           H  + +CIV   +G   + L  LKVF   GW
Sbjct: 51  HEGVYQCIVENNQGKTESQLSQLKVFVPPGW 81


>SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)
          Length = 942

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 642 HHAIQKCIVPKTEGHCMTDLIILKVFCTDGW 550
           H  + +CIV   +G   + L  LKVF   GW
Sbjct: 635 HEGVYQCIVENNQGKTESQLSQLKVFVPPGW 665


>SB_47010| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.3)
          Length = 270

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 276 VVINPGNPTGQVLTRANIEQIIKFAYERNLFILADEVY 389
           V  N  +PTG  L+    E+++  A   NL I++++VY
Sbjct: 54  VTPNFHDPTGASLSTERCEKLVNIAERHNLLIISNDVY 91


>SB_3| Best HMM Match : Peptidase_C21 (HMM E-Value=5)
          Length = 186

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 397 FSWYTSSAKMNKLRS*ANLMICSIFARVNTCPVGFPGLI 281
           FSW+ SSA++ ++   A  ++C+++ R+   P     LI
Sbjct: 146 FSWWKSSARVRRMLKPAVKVVCAMYVRLWAAPTKSKRLI 184


>SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 120 IPQYPLFSGTLSELGVRQVDYYLDEEHDWALQIL 221
           +P Y   SG   E  +R ++  L EE DWALQ +
Sbjct: 426 LPVYDSLSGMTREYNIRGLETKL-EERDWALQAI 458


>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
          Length = 300

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 535 GATASPAISAKNLQYNEVCHAVPLGFGDNAFLDCV-MKPPSXRKNLTQFSSSMRLET 702
           G T SP    + +   +VC+ +    GD+  + CV ++      N+ Q+ S+M   T
Sbjct: 36  GMTMSPLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTFFNIAQYESAMSCYT 92


>SB_53838| Best HMM Match : DUF745 (HMM E-Value=0.31)
          Length = 387

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -2

Query: 661 SGKTEASSRNPKMHCPQNRGALHDRPHYIEGFLH*WLEMQ*LHVSRPQAXLAAQPFEAVK 482
           S K+  S+R+  +     R AL ++  +    L    E +  ++   Q   A +  EAV 
Sbjct: 166 SSKSPKSARDTLIDVRAKRAALEEKIKFNNSILE--QEQKLANLKLQQELNATKAEEAVY 223

Query: 481 KLANSMREYGAPI 443
           K A S+ E+G PI
Sbjct: 224 KEAISLEEFGLPI 236


>SB_30762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -2

Query: 661 SGKTEASSRNPKMHCPQNRGALHDRPHYIEGFLH*WLEMQ*LHVSRPQAXLAAQPFEAVK 482
           S K+  S+R+  +     R AL ++  +    L    E +  ++   Q   A +  EAV 
Sbjct: 166 SSKSPKSARDTLIDVRAKRAALEEKIKFNNSILE--QEQKLANLKLQQELNATKAEEAVY 223

Query: 481 KLANSMREYGAPI 443
           K A S+ E+G PI
Sbjct: 224 KEAISLEEFGLPI 236


>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
          Length = 1607

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -2

Query: 661 SGKTEASSRNPKMHCPQNRGALHDRPHYIEGFLH*WLEMQ*LHVSRPQAXLAAQPFEAVK 482
           S K+  S+R+  +     R AL ++  +    L    E +  ++   Q   A +  EAV 
Sbjct: 166 SSKSPKSARDTLIDVRAKRAALEEKIKFNNSILE--QEQKLANLKLQQELNATKAEEAVY 223

Query: 481 KLANSMREYGAPI 443
           K A S+ E+G PI
Sbjct: 224 KEAISLEEFGLPI 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,458,490
Number of Sequences: 59808
Number of extensions: 477289
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)