Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0222
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   126   3e-30
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    28   1.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.3  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    28   1.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   3.8  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   8.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  126 bits (304), Expect = 3e-30
 Identities = 59/96 (61%), Positives = 75/96 (78%)
 Frame = +2

Query: 134 RALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILS*LSDSDQEDMKRQKYEMISV 313
           + +R +G+ V DVS IT APE+LGGRVKTLHPAVH GIL+    SD++D+  Q  E I +
Sbjct: 35  KMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEKDLVEQSIEKIDI 94

Query: 314 VVCNLYHFVQTVSKPDVTVADAVENIDIGGVTLLRA 421
           VVCNLY F +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 95  VVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 22/32 (68%), Positives = 27/32 (84%)
 Frame = +1

Query: 37  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTA 132
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTA 34



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 30/73 (41%), Positives = 36/73 (49%)
 Frame = +1

Query: 427 KNHDRVTVVCDPADYDAVVKEIKENKHLRRLWAQGQXLALKAFTSYFRTMTLPYRDYFRX 606
           KNH RVT++ DPADY     +   +K  +         ALKAF S   +      DYFR 
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQ---DDRNTYALKAFAS-TASYDAAITDYFRK 188

Query: 607 QLLARGKPQLTLR 645
           Q  A G  QLTLR
Sbjct: 189 Q-YAAGVDQLTLR 200


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
 Frame = -3

Query: 501 VLFDFFDY-SIVVGRVTDDGDPVVVLGXARRRVTP-PMSMFSTASATVTSGLDTVWTK-W 331
           ++ D FDY S +   +T  G PVV L   R    P PM    +   TV S +DT  ++ W
Sbjct: 562 IITDDFDYTSDLTSFLTFAGIPVVNLAFERNEENPTPMPFLGSCEDTV-SWIDTFGSEYW 620

Query: 330 XRLQTTTLIISYF*RFMSSWSESDNQLKIPACTAGCKVFTRPPSISGA 187
                   I SY   F+++       L+      G ++  R P I GA
Sbjct: 621 ENAARLGKIWSYLILFLANDPVVPYDLEDEINGVG-EMLKRIPEIPGA 667


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 154 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 246
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 465 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTKWXRL 322
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++K  +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 448  VVCDPADYDAVVKEIKENK-HLRRLWAQGQXLALKAFTSYFRTMTLPYRDYFRXQLLARG 624
            V+ D    + ++KE+  +K ++   W QG  +   +F + +R + L   D    + +A  
Sbjct: 1095 VLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALH 1154

Query: 625  KPQLT 639
            KP+++
Sbjct: 1155 KPRIS 1159


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 501 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 385
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,825
Number of Sequences: 5004
Number of extensions: 48354
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)