Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0222
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 81 1e-15
11_06_0257 + 21746643-21748091 32 0.57
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 31 1.3
03_01_0112 + 902459-902770,903275-903280 30 1.7
09_04_0652 - 19227686-19227926,19229368-19232294 30 2.3
05_07_0183 + 28251548-28252009,28252172-28252594 29 4.0
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 29 4.0
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 29 5.3
11_02_0149 - 8801675-8804332 29 5.3
10_08_0415 - 17761594-17762382 29 5.3
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 29 5.3
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 29 5.3
06_01_0845 - 6430419-6431195 28 7.0
03_05_1061 + 30037069-30037074,30037638-30037715,30038687-300387... 28 7.0
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 28 9.3
08_01_0621 - 5426210-5427787 28 9.3
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +2
Query: 137 ALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILS*LSDSDQ-EDMKRQKYEMISV 313
+L AG+ V V IT PEML GRVKTLHP+VH GIL+ + + V
Sbjct: 81 SLEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDV 140
Query: 314 VVCNLYHFVQTVSKPDVTVADAVENIDIGGVTLLRA 421
VV NLY F V+ ++ D +ENIDIGG T++RA
Sbjct: 141 VVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 31 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTAT 135
K AL+S+SDKT L L L G +I++GGTA+
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTAS 80
>11_06_0257 + 21746643-21748091
Length = 482
Score = 31.9 bits (69), Expect = 0.57
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 199 HLRCSRDVRHILNCEAGVPKRPWRYRHWQST 107
HL C++ R+++N +G WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 220 SFHPTSEHLRCSR-DVRHILNCEAGVPKRPWRYRHWQST 107
S HP S H S+ D I +C A V WR RH +T
Sbjct: 791 SHHPFSAHAHYSQPDFPTIASCRAAVASSKWRRRHPSTT 829
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 208 TSEHLRCSRDVRHILNCEAGVPKRPWRYR 122
T+ LR RD RH+ CE+GVPK R++
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPKEEARFK 85
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 82 KSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 243
++++E LI + SE+ P S C S + ++G + GTCW
Sbjct: 427 QTVAEGNNSLIPGSESGQVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 121 GGTATGASERRPHSSRCVGHHESTGDARRSGENFTSSG 234
GG +G +RR ++ CV E G +GE +G
Sbjct: 92 GGLISGLRDRRSNALTCVSMQEGDGQGEEAGEGDVGAG 129
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 63 GSTLVSKEPVGMWPAVDCQWRYR----HGRFGTPASQFKMCR 176
G + ++PVG WPA C YR RFG AS +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCP-PYRVSADASRFGDRASASRMAR 169
>11_06_0349 +
22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 31 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHH 183
KL D LLS + LS C L+ +A + TG E SS+ H
Sbjct: 773 KLVKFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLESSLSSSQAAPEH 823
>11_02_0149 - 8801675-8804332
Length = 885
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 10 QNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 111
QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 555 QNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>10_08_0415 - 17761594-17762382
Length = 262
Score = 28.7 bits (61), Expect = 5.3
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +1
Query: 4 AXQNMASNGKLALLSV-SDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGH 180
A MA++GK S S K L+ K L G + S G R +S C G
Sbjct: 78 AVDAMAASGKKVDASNNSGKPRWLAATKGLDHNGGVGVFSLGAWRYKGVARQSASMCCGQ 137
Query: 181 HESTGDARRSGENFTSSGTCWDLKLIIR 264
+ + GE + +G C D+ I+R
Sbjct: 138 LDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 15 HGVKWKTSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRF 143
HG ++KT+++ G ++ PA C+W RH RF
Sbjct: 344 HGDEYKTAAALTSTGAGMRAAARRCSYSCPAEGCRWNRRHPRF 386
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 391 DVLDRVRHGHVRLRYRLDEM-VXVTDHH 311
DVL +R GHV L Y L E DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714
>06_01_0845 - 6430419-6431195
Length = 258
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +1
Query: 64 GLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 243
GL +L + ASG AT + P + C G E GD R E G CW
Sbjct: 15 GLQTLIAPDAAAAASRSASGYVATRTLKASPRAVGCPGGGE--GDGEREEEEEGEEGGCW 72
>03_05_1061 +
30037069-30037074,30037638-30037715,30038687-30038745,
30038823-30038907,30039206-30039294,30039384-30039446,
30039635-30039707,30040033-30040086,30040224-30040265,
30040609-30040674
Length = 204
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 436 DRVTVVC-DPADYDAVVKEIKENKHL-RRLWAQGQXLALKAFTSYFRTMTLPYRDYFRXQ 609
DR C DP+ D K+ K++KH +R + Q L L S+F + + YF Q
Sbjct: 92 DRKLKHCLDPSSQDEHKKKEKKSKHKSKRAANEAQLLNLMCEISFFTQAPIDQKSYFPEQ 151
Query: 610 LLA 618
A
Sbjct: 152 FSA 154
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 61 TGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDAR 204
T L A + S C + + TA S RR H VG + GD +
Sbjct: 147 TSTLQTASATSPCSGRTTGAAATAVPFSRRRRHGGGGVGRGPADGDGQ 194
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 480 YSIVVGRVTDDGDPVVVLGXARRRVTPP 397
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,790,497
Number of Sequences: 37544
Number of extensions: 365862
Number of successful extensions: 1248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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