Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0222
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 1e-32
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 75 5e-14
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 32 0.58
SB_30692| Best HMM Match : REV (HMM E-Value=3.8) 29 5.4
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098) 28 7.2
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_26612| Best HMM Match : NC (HMM E-Value=6.7) 28 9.5
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 9.5
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 136 bits (330), Expect = 1e-32
Identities = 66/95 (69%), Positives = 79/95 (83%)
Frame = +2
Query: 137 ALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILS*LSDSDQEDMKRQKYEMISVV 316
A+RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GIL+ +S+ D+ DM +Q +E I VV
Sbjct: 69 AIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVV 128
Query: 317 VCNLYHFVQTVSKPDVTVADAVENIDIGGVTLLRA 421
VCNLY FV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 129 VCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 427 KNHDRVTVVCDPADYDAVVKEIKENKHLRRLWAQGQXLALKAFTSYFRTMTLPYRDYFRX 606
KNH+RVTVVCDP DY+ V+ E+ EN+ L + LALKAF S+ + + DYFR
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAF-SHTASYDMAISDYFRK 224
Query: 607 Q 609
+
Sbjct: 225 E 225
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1
Query: 28 GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTA 132
G LALLSVS+K GL+ AK L + G +L+ASGGTA
Sbjct: 33 GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTA 67
>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
Length = 79
Score = 75.4 bits (177), Expect = 5e-14
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +2
Query: 245 ILS*LSDSDQEDMKRQKYEMISVVVCNLYHFVQTVSKPDVTVADAVENIDIGGVTLLRA 421
IL+ +S+ D+ DM +Q +E I VVVCNLY FV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 2 ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60
Score = 35.5 bits (78), Expect = 0.047
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 427 KNHDRVTVVCDPADYD 474
KNH+RVTVVCDP DY+
Sbjct: 63 KNHERVTVVCDPEDYN 78
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 436 DRVTVVCDPADYDAVVKEIKE-NKHLRR-LWAQG-QXLALKAFTSYFRTMTLPYRDYFRX 606
D + CDPA+ +A++ I+E N+H ++ LW + LA K S T L +RD F
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVLWVMNIRSLAYKKLAS---TRPLTWRDSFVL 1503
Query: 607 QLLAR 621
LL +
Sbjct: 1504 DLLRK 1508
>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
Length = 485
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 125 VPPRALRNAGLTVQDVSDITRAPEMLGGRVKT----LHPAVHAGILS*LSDSDQ 274
+PPR+ A TV D S P+ GG+V + L P V G++ S S Q
Sbjct: 166 LPPRSSNEANETVIDTSLTDSPPDAEGGKVTSNEDELVPTVSQGVVEATSPSQQ 219
>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 263 DSDQEDMKRQKYEMISVVVCNLYHFVQTVSKPDVTVADAVENIDIGGVT 409
+SD+ED + + YE+I ++ + D+ ++ I IGG T
Sbjct: 5 ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53
>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
Length = 1450
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -1
Query: 335 NGXGYRPPRLSSRTSDVSCLPGQSRIISLRSQHVPLDVKFSPDLRASPVLS*CPTHLEL* 156
+G + PRL+ R DV LPG+ ++ P+ V SP+ P ++
Sbjct: 1120 SGSVFASPRLAQRDDDVISLPGRMDLVDAVRIASPITVLREATHTKSPLAMQSPLAVQ-- 1177
Query: 155 GRRSEAPVAVP-PLAIN 108
P+++P P+A+N
Sbjct: 1178 -SPVHTPISLPHPIAMN 1193
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 495 FDFFDYSIVVGRVTDDGDPVVVL 427
FDF D+SI+V ++T PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316
>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
Length = 451
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 501 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTKW 331
V+ + S+ RVT D V R+TP M TAS T +T +DTV+T
Sbjct: 68 VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127
Query: 330 XRLQTTTLII 301
TL++
Sbjct: 128 VTFYRLTLVM 137
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 501 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTKW 331
V+ + S+ R+T D V R+TP M TAS T +T +DTV+T
Sbjct: 136 VMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 195
Query: 330 XRLQTTTLII 301
TL++
Sbjct: 196 VTFYRLTLVM 205
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 341 QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 472
+T P+ T +I GV+ A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613
>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 157 HSSRCVGHHESTGDARRSGENFTSSGTCWDLKLII 261
HSS + HH+++ D R + + S T WD K ++
Sbjct: 65 HSSDIIRHHQTSSDIIRHHQTSSDSRT-WDKKYLV 98
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 24 KWKTSSSQRFRQDGSTLVSKEP 89
+W T ++R+R+DGS ++ EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,206,637
Number of Sequences: 59808
Number of extensions: 411914
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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