Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0222
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   127   1e-29
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    29   4.7  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    29   4.7  
AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical...    28   8.3  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  127 bits (306), Expect = 1e-29
 Identities = 58/96 (60%), Positives = 77/96 (80%)
 Frame = +2

Query: 134 RALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILS*LSDSDQEDMKRQKYEMISV 313
           +A+R+ G+ V DV+D+T+ PEMLGGRVKTLHPAVH GIL+  ++SD++D+++     +SV
Sbjct: 40  KAIRDQGIDVHDVADVTKFPEMLGGRVKTLHPAVHGGILARDTESDRKDLEKHNISFVSV 99

Query: 314 VVCNLYHFVQTVSKPDVTVADAVENIDIGGVTLLRA 421
           VVCNLY F +TV   D +V +AVENIDIGGVTLLRA
Sbjct: 100 VVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +1

Query: 427 KNHDRVTVVCDPADYDAVVKEIKENKHLRRLWAQGQXLALKAF---TSYFRTMTLPYRDY 597
           KNH+RV+V+CDPADYD ++ E+K     R    + Q LALKAF   TSY  +++     +
Sbjct: 138 KNHERVSVICDPADYDHIISELKSGGTTRE---RRQLLALKAFEHTTSYDESIS----GF 190

Query: 598 FRXQLLARGKPQLTLR 645
            R +    G+  L LR
Sbjct: 191 MRRRFAGNGERALPLR 206



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/39 (61%), Positives = 27/39 (69%)
 Frame = +1

Query: 16  MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTA 132
           M     LA++SVSDKTGL+ LA  L   GL LIASGGTA
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTA 39


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 176  DITRAPEMLGGRVKTLHPAVHAGILS*LSDSDQEDMKRQKYEMISVVVCNLYHFVQTVSK 355
            ++  +P+ +         AV   I   +SD++  D+ R+K E  S++  N+    Q +++
Sbjct: 972  ELVDSPDQVENEEPERVEAVTENIRQEMSDAEMRDLMRKKREQYSMLFPNVPQPFQPLNR 1031

Query: 356  PDVTVADA 379
             DVT   A
Sbjct: 1032 FDVTAPGA 1039


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 176  DITRAPEMLGGRVKTLHPAVHAGILS*LSDSDQEDMKRQKYEMISVVVCNLYHFVQTVSK 355
            ++  +P+ +         AV   I   +SD++  D+ R+K E  S++  N+    Q +++
Sbjct: 972  ELVDSPDQVENEEPERVEAVTENIRQEMSDAEMRDLMRKKREQYSMLFPNVPQPFQPLNR 1031

Query: 356  PDVTVADA 379
             DVT   A
Sbjct: 1032 FDVTAPGA 1039


>AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical
           protein C24H12.1 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 519 LGTRAXISPEGVHFILSDYDLAISGLLPXAITR 617
           LG R  +S E +HFIL ++DL   G L   + R
Sbjct: 435 LGKRLYVSNEDMHFILKNFDLKY-GFLTRCLQR 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,160,134
Number of Sequences: 27780
Number of extensions: 286089
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)