Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0222
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    81   6e-16
At1g64410.1 68414.m07301 hypothetical protein                          30   1.5  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    30   1.5  
At5g61100.1 68418.m07666 hypothetical protein                          29   2.5  
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /...    28   7.7  
At3g42320.1 68416.m04373 hypothetical protein various predicted ...    28   7.7  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
 Frame = +2

Query: 140 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILS*LS-DSDQEDMKRQKYEMISVV 316
           L NAG++V  V  +T  PEML GRVKTLHP +H GIL+    +   E +         VV
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVV 167

Query: 317 VCNLYHFVQTVSKP-DVTVADAVENIDIGGVTLLRA 421
           V NLY F + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 168 VVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 10  QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTAT 135
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTAS 106


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 427 KNHDRVTVVCDPADYDAVVKEIKENK 504
           K HDRVTV  +P D D   KE  E K
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVK 607


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 427 KNHDRVTVVCDPADYDAVVKEIKENK 504
           K HDRVTV  +P D D   KE  E K
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVK 233


>At5g61100.1 68418.m07666 hypothetical protein
          Length = 227

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 168 MCRTSREHRRCSEVG*KLYIQRYMLGS*ADYPTLTRKT*NVRSTR 302
           MCR +REH  C+ V  +   + ++     D+ ++  KT N +S+R
Sbjct: 51  MCRDTREHTYCARVMFQRVPRLWICEECRDFSSVANKTANAQSSR 95


>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 469

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 33  TSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRFGTPASQF 164
           TS    F Q G+T+++ +    WP +     Y  GR GT   +F
Sbjct: 97  TSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140


>At3g42320.1 68416.m04373 hypothetical protein various predicted
           Helicases, Arabidopsis thaliana
          Length = 541

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 427 KNHDRVTVVCDPADYDAVVKEIKE-NKH--LRRLWAQGQXL 540
           K HDRVTV  +P + D   KE  E NK    RR+ A  + L
Sbjct: 342 KEHDRVTVTIEPNNQDTTKKEKDELNKKPPSRRVHASAKNL 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,641
Number of Sequences: 28952
Number of extensions: 269136
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)