Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0220
         (272 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   0.44 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   1.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       19   9.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 0.44
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -3

Query: 234 PQPRFGXPW-----RAAGADGERGHXEYERYHPDAP 142
           P PRF  P+     RAAG  G +   + + Y PD+P
Sbjct: 79  PYPRF-PPYDRMDIRAAGYYGPQQQMDGQEYRPDSP 113



 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 234 PQPRFGXPWRAAGADGERGHXEYERY 157
           P P +  PW  +  + +RG   Y RY
Sbjct: 229 PSPLY--PWMRSQFERKRGRQTYTRY 252


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 234 PQPRFGXPWRAAGADGERGHXEYERY 157
           P P +  PW  +  + +RG   Y RY
Sbjct: 231 PSPLY--PWMRSQFERKRGRQTYTRY 254


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 106 KHD*CGSHFEMSADXXXRNDHVNWNDT 26
           KHD    HFE S      ++   +N++
Sbjct: 88  KHDRHERHFESSFGNNLHSEKAKFNES 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,136
Number of Sequences: 336
Number of extensions: 582
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4471194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)