Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0220
         (272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   2.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    23   7.8  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -1

Query: 155 IXMPHXWFIMRLIPLPQTRLMRVTFRNV 72
           I  P  W +   +P+P+T++ ++  ++V
Sbjct: 393 IVFPPLWILASFLPIPRTKIHQMRVKHV 420


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -3

Query: 237 SPQPRFGXPWRAAGADGERGHXEYERYHPDA 145
           S Q  +  P     +     H  Y+ YHPD+
Sbjct: 305 SQQEDYDKPKNTQVSRSSNHHRRYDSYHPDS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,481
Number of Sequences: 5004
Number of extensions: 8326
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)