Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0220
         (272 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 25   9.5  

>SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1133

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 RYHKHD*CGSHFEMSADXXXRNDHVNWNDTVLSEV 11
           RYHK + CG   +M  +     +H++   +V  EV
Sbjct: 373 RYHKCETCGKRVDMMMNREEEEEHMSGECSVCKEV 407


>SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 456

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 261 DFAIASVRSPQPRFGXPWRAAGADGERG 178
           D  I + +   PR+  PWR    + E+G
Sbjct: 367 DAVIKAAQMKDPRYDPPWRRIDPETEKG 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,905,611
Number of Sequences: 59808
Number of extensions: 72785
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)