Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0220
         (272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   0.39 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   1.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 0.39
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 249 ASVRSPQPRFGXPWRAAGADGERGHXEYERY 157
           AS   P P +  PW  +  + +RG   Y RY
Sbjct: 252 ASANLPSPLY--PWMRSQFERKRGRQTYTRY 280


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 245 ACARPSRGSVXP 210
           +C RPSRG+  P
Sbjct: 15  SCTRPSRGNAVP 26


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 245 ACARPSRGSVXP 210
           +C RPSRG+  P
Sbjct: 15  SCTRPSRGNAVP 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,364
Number of Sequences: 438
Number of extensions: 532
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)